@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu31550: (2016-07-22 )
MEYVIEMLNIRKAFPGIVANDNINLQVKKGEIHALLGENGAGKSTLMNVLFGLYQPERGEIRVRGEKVHINSPNKANDLGIGMVHQHFMLVDTFTVAENIILGKEPKKFGRIDRKRAGQEVQDISDRYGLQIHPEAKAADISVGMQQRAEILKTLYRGADILIFDEPTAVLTPHEIKELMQIMKNLVKEGKSIILITHKLKEIMEICDRVTVIRKGKGIKTLDVRDTNQDELASLMVGREVSFKTEKRAAQPGAEVLAIDGITVKDTRGIETVRDLSLSVKAGEIVGIAGVDGNGQSELIEAVTGLRKTDSGTITLNGKQIQNLTPRKITESGIGHIPQDRHKHGLVLDFPIGENILLQSYYKKPYSALGVLHKGEMYKKARSLITEYDVRTPDEYTHARALSGGNQQKAIIGREIDRNPDLLIAAQPTRGLDVGAIEFVHKKLIEQRDAGKAVLLLSFELEEIMNLSDRIAVIFEGRIIASVNPQETTEQELGLLMAGSTQKEAGKANG

Atome Classification :

(40 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




ATP_C_11(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




ANP_A_3(4Q4A)
?
[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




ATP_H_8(2FGJ)

[Raw transfer]




ADP_B_2(2FFA)

[Raw transfer]




ATP_D_12(1XEF)

[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




12D_A_2(3B5J)

[Raw transfer]




ANP_A_3(3QF4)
?
[Raw transfer]




ADP_B_2(2FFB)

[Raw transfer]




ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ADP_A_3(4YER)
?
[Raw transfer]




88 HHSearch 71.5425% 38 - C5 -4F4C - PGP1_CAEEL -
86 HHSearch 61.3223% 29 - C3 -4FIN - ETTA_ECOLI -
104 HHSearch 60.3631%-108 - C5 -2IT1 - ? -
108 HHSearch 59.9726%-124 - C5 -3RLF - MALK_ECOLI -
24 PsiBlast_CBE 59.9331%-114 - C5 -4U02 - ? -
23 PsiBlast_CBE 59.8931%-107 - C5 -4U02 - ? -
6 PsiBlast_PDB 59.6431%-115 - C5 -4U00 - ? -
99 HHSearch 59.2328%-122 * C5 *4TQU - ? -
106 HHSearch 58.9929%-107 - C5 -2YYZ - ? -
7 PsiBlast_PDB 58.0531%-108 - C5 -4U02 - ? -
25 PsiBlast_CBE 58.0031%-108 - C5 -4U02 - ? -
92 HHSearch 53.8720% 3 - C2 -2IW3 - EF3A_YEAST -
5 PsiBlast_PDB 52.9232% -24 - C5 -4YMW - ? -
1 PsiBlast_PDB 52.8632% -19 - C5 -4YMS - ? -
3 PsiBlast_PDB 52.7932% -21 - C5 -4YMU - ? -
4 PsiBlast_PDB 52.4732% -21 - C5 -4YMV - ? -
22 PsiBlast_CBE 52.2332% -24 - C5 -4YMU - ? -
33 PsiBlast_CBE 52.2231% -8 - C5 -2OLK - ? -
78 Fugue 52.1025% 30 - C5 -3TUZ - METN_ECOLI -
2 PsiBlast_PDB 52.0032% -23 - C5 -4YMT - ? -
51 PsiBlast_CBE 46.4831% -53 - C5 -2FF7 4.5
59 PsiBlast_CBE 45.2431% -50 - C5 -2PMK 4.6
65 PsiBlast_CBE 44.9331% -46 - C5 -3B5J 4.7
72 PsiBlast_CBE 44.5931% -48 - C5 -1XEF 5.0 HLYBP_ECOLX
68 PsiBlast_CBE 43.0931% -44 - C5 -2FGJ 5.2 HLYBP_ECOLX
71 PsiBlast_CBE 42.7631% -43 - C5 -1XEF 4.8
69 PsiBlast_CBE 42.7131% -36 - C5 -2FGJ 4.7 HLYBP_ECOLX
66 PsiBlast_CBE 42.5731% -34 - C5 -2FGJ 4.5
73 PsiBlast_CBE 42.5431% -42 - C5 -1XEF 5.1 HLYBP_ECOLX
70 PsiBlast_CBE 42.3631% -47 - C5 -2FFA 4.6
74 PsiBlast_CBE 41.9531% -43 - C5 -1XEF 4.5 HLYBP_ECOLX
64 PsiBlast_CBE 41.5731% -48 - C5 -2FFB 4.5
67 PsiBlast_CBE 41.5631% -39 - C5 -2FGJ 4.8 HLYBP_ECOLX
60 PsiBlast_CBE 41.1331% -48 - C5 -2FGK 5.3
61 PsiBlast_CBE 41.1031% -46 - C5 -2FGK 4.8 HLYBP_ECOLX
63 PsiBlast_CBE 40.6831% -44 - C5 -2FGK 5.5 HLYBP_ECOLX
62 PsiBlast_CBE 40.0631% -47 - C5 -2FGK 5.1 HLYBP_ECOLX
76 PsiBlast_CBE 38.6331% 2 - C5 -3QF4 4.4 ?
75 PsiBlast_CBE 37.4931% 2 - C5 -4Q4A 4.9 ?
100 HHSearch 23.2730% -12 - C5 -4YER 5.6 ?