@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu31930: (2016-07-23 )
MIIGVPKEIKNNENRVALTPGGVSQLISNGHRVLVETGAGLGSGFENEAYESAGAEIIADPKQVWDAEMVMKVKEPLPEEYVYFRKGLVLFTYLHLAAEPELAQALKDKGVTAIAYETVSEGRTLPLLTPMSEVAGRMAAQIGAQFLEKPKGGKGILLAGVPGVSRGKVTIIGGGVVGTNAAKMAVGLGADVTIIDLNADRLRQLDDIFGHQIKTLISNPVNIADAVAEADLLICAVLIPGAKAPTLVTEEMVKQMKPGSVIVDVAIDQGGIVETVDHITTHDQPTYEKHGVVHYAVANMPGAVPRTSTIALTNVTVPYALQIANKGAVKALADNTALRAGLNTANGHVTYEAVARDLGYEYVPAEKALQDESSVAGA

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAI_B_4(2VHZ)
DHA_MYCTU
[Raw transfer]




NAI_A_3(2VHZ)
DHA_MYCTU
[Raw transfer]




NAI_B_4(2VHV)
DHA_MYCTU
[Raw transfer]




NAI_A_3(2VHV)
DHA_MYCTU
[Raw transfer]




NAD_E_8(2VOJ)
DHA_MYCTU
[Raw transfer]




NAD_G_7(1PJC)
?
[Raw transfer]




NAD_C_6(2VOJ)
DHA_MYCTU
[Raw transfer]




NAD_G_7(1PJC)
?
[Raw transfer]




NAD_G_7(1PJC)
?
[Raw transfer]




NAD_A_4(2VOJ)
DHA_MYCTU
[Raw transfer]




6MD_A_2(4LMP)
?
[Raw transfer]




6MD_A_2(4LMP)
?
[Raw transfer]




GOL_B_6(1PTJ)
PNTAA_RHORT
[Raw transfer]




GOL_B_7(1NM5)
PNTAA_RHORT
[Raw transfer]




2OP_C_7(2VOJ)
DHA_MYCTU
[Raw transfer]




PYR_A_7(1SAY)
?
[Raw transfer]




2OP_A_5(2VOJ)
DHA_MYCTU
[Raw transfer]




112 HHSearch 78.6758% -68 - C3 -1PJC 9.7 ?
10 PsiBlast_PDB 78.2757% -66 - C3 -1SAY 3.6 ?
9 PsiBlast_PDB 78.1057% -64 - C3 -1PJB - ? -
1 PsiBlast_PDB 77.8262% -58 - C3 -2EEZ - ? -
11 PsiBlast_PDB 77.3857% -67 - C3 -1PJC 9.7 ?
111 HHSearch 74.9151% -38 - C3 -4LMP 4.8 ?
116 HHSearch 74.7363% -37 - C3 -2EEZ - ? -
30 PsiBlast_CBE 74.6851% -42 - C3 -2VHW - DHA_MYCTU -
101 Fugue 74.6157% -33 - C3 -1PJC 9.2 ?
4 PsiBlast_PDB 74.2751% -40 - C3 -4LMP 4.8 ?
28 PsiBlast_CBE 74.0751% -40 - C3 -2VHW - DHA_MYCTU -
29 PsiBlast_CBE 73.8651% -41 - C3 -2VHW - DHA_MYCTU -
5 PsiBlast_PDB 73.8651% -40 - C3 -2VHW - DHA_MYCTU -
22 PsiBlast_CBE 73.5251% -34 - C3 -2VOJ 7.5 DHA_MYCTU
24 PsiBlast_CBE 73.4451% -33 - C3 -2VHX - DHA_MYCTU -
31 PsiBlast_CBE 73.1651% -32 - C3 -2VHV 6.5 DHA_MYCTU
2 PsiBlast_PDB 73.0551% -33 - C3 -2VOE - DHA_MYCTU -
23 PsiBlast_CBE 73.0251% -35 - C3 -2VHZ 8.3 DHA_MYCTU
26 PsiBlast_CBE 72.9751% -31 - C3 -2VHW - DHA_MYCTU -
8 PsiBlast_PDB 72.9551% -33 - C3 -2VHV 6.0 DHA_MYCTU
3 PsiBlast_PDB 72.8151% -30 - C3 -2VOJ 4.2 DHA_MYCTU
7 PsiBlast_PDB 72.4551% -36 - C3 -2VHZ 6.6 DHA_MYCTU
21 PsiBlast_CBE 71.8351% -31 - C3 -2VOJ 6.7 DHA_MYCTU
58 PsiBlast_CBE 42.3632% -20 - C3 -1NM5 0.9 PNTAA_RHORT
35 PsiBlast_CBE 40.9632% -12 - C3 -1PTJ 3.0 PNTAA_RHORT