@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu31980: (2016-07-23 )
MLKGFTPWPDELAETYRKNGCWAGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQMDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHAEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDEMRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLLAGFKK

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

IXN_B_8(3O83)
?
[Raw transfer]




IXN_A_3(3O83)
?
[Raw transfer]




1HZ_B_5(4IZ6)
ENTE_ECOLI
[Raw transfer]




1HZ_A_3(4IZ6)
ENTE_ECOLI
[Raw transfer]




HP8_B_6(3O82)
?
[Raw transfer]




HP8_A_3(3O82)
?
[Raw transfer]




AMP_D_4(1MDB)
DHBE_BACSU
[Raw transfer]




AMP_D_4(1MDB)
DHBE_BACSU
[Raw transfer]




H90_A_3(3U17)
?
[Raw transfer]




AMP_A_2(1MD9)
DHBE_BACSU
[Raw transfer]




H89_B_9(3U16)
?
[Raw transfer]




H90_B_9(3U17)
?
[Raw transfer]




HTJ_A_3(3O84)
?
[Raw transfer]




H89_A_3(3U16)
?
[Raw transfer]




HTJ_B_8(3O84)
?
[Raw transfer]




CIT_C_3(1ULT)
LCFCS_THET8
[Raw transfer]




IXN_B_8(3O83)
?
[Raw transfer]




36 HHSearch 98.9899%-103 - C4 -1MDB 5.8 DHBE_BACSU
1 PsiBlast_PDB 98.9899%-103 - C4 -1MDB 5.8 DHBE_BACSU
2 PsiBlast_PDB 98.3699%-100 - C4 -1MDF - DHBE_BACSU -
3 PsiBlast_PDB 97.2498%-100 - C4 -1MD9 4.9 DHBE_BACSU
40 HHSearch 70.3048% -41 - C4 -4IZ6 8.4 ENTE_ECOLI
23 PsiBlast_CBE 66.7848% -22 - C4 -3RG2 - ENTB_ECOLI (first) -
5 PsiBlast_PDB 66.7448% -19 - C4 -3RG2 - ENTB_ECOLI (first) -
28 PsiBlast_CBE 66.7248% -21 - C4 -3RG2 - ENTB_ECOLI (first) -
26 PsiBlast_CBE 66.7248% -22 - C4 -3RG2 - ENTB_ECOLI (first) -
27 PsiBlast_CBE 66.6948% -22 - C4 -3RG2 - ENTB_ECOLI (first) -
21 PsiBlast_CBE 66.5148% -24 - C4 -4IZ6 7.9 ENTE_ECOLI
4 PsiBlast_PDB 66.4248% 0 - C- -4IZ6 - ENTE_ECOLI -
25 PsiBlast_CBE 66.0248% 0 - C- -3RG2 - ENTB_ECOLI (first) -
24 PsiBlast_CBE 65.7948% -18 - C4 -3RG2 - ENTB_ECOLI (first) -
22 PsiBlast_CBE 65.7448% -23 - C4 -3RG2 - ENTB_ECOLI (first) -
33 PsiBlast_CBE 65.1244% -46 - C4 -3O82 7.4 ?
31 PsiBlast_CBE 64.9444% -47 - C4 -3O84 7.7 ?
6 PsiBlast_PDB 64.7644% -46 - C4 -3O82 7.7 ?
29 PsiBlast_CBE 64.6644% -49 - C4 -3U17 8.7 ?
32 PsiBlast_CBE 64.4844% -47 - C4 -3O83 9.6 ?
9 PsiBlast_PDB 64.3444% -48 - C4 -3U16 8.3 ?
30 PsiBlast_CBE 64.3044% -46 - C4 -3U16 9.0 ?
7 PsiBlast_PDB 64.2244% -47 - C4 -3O83 9.3 ?
8 PsiBlast_PDB 63.9344% -47 - C4 -3O84 7.7 ?
10 PsiBlast_PDB 63.7544% -48 - C4 -3U17 8.8 ?
45 HHSearch 61.8344% -43 - C4 -3O83 2.3 ?
11 PsiBlast_PDB 52.7730% 9 - C4 -1ULT 2.7 LCFCS_THET8