@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu32520: (2016-07-24 )
MSGRRELCTPLRTIMTPGPVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVIEPEDDVLIPIYGRFGYLLTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGGCEVKVDEWKIDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAMGLRLFGDDSCKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRHNAGIEAGKALQAALDVYENAGRQAAV

Atome Classification :

(34 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MMM_A_3(2YRI)
?
[Raw transfer]



GOL_A_3(4CBR)
SPYA_HUMAN
[Raw transfer]



GLV_C_3(2HUI)
?
[Raw transfer]



AOA_A_3(1H0C)
SPYA_HUMAN
[Raw transfer]



PLP_A_2(1VJO)
?
[Raw transfer]



PLP_A_2(1VJO)
?
[Raw transfer]



ALA_C_3(2HUU)
?
[Raw transfer]



GLV_D_4(2HUI)
?
[Raw transfer]



AOA_B_2(1J04)
SPYA_HUMAN
[Raw transfer]



PLP_B_4(3ISL)
PUCG_BACSU
[Raw transfer]



PMP_B_4(2YRI)
?
[Raw transfer]



PLP_A_3(3ISL)
PUCG_BACSU
[Raw transfer]



1BO_D_4(2HUF)
?
[Raw transfer]



1BO_D_4(2HUF)
?
[Raw transfer]



PLP_B_4(2YRR)
?
[Raw transfer]



PLP_A_3(2YRR)
?
[Raw transfer]



1BO_D_4(2HUU)
?
[Raw transfer]



1BO_C_3(2HUF)
?
[Raw transfer]



PLP_A_3(2YRR)
?
[Raw transfer]



UNL_A_2(3F0H)
?
[Raw transfer]
21 PsiBlast_CBE 93.46100%-134 - C1 -3ISL 3.8 PUCG_BACSU
1 PsiBlast_PDB 93.23100%-135 - C1 -3ISL - PUCG_BACSU -
49 HHSearch 78.9798% -32 - C1 -3ISL 4.1 PUCG_BACSU
2 PsiBlast_PDB 77.4450%-113 - C1 -3NNK - ? -
3 PsiBlast_PDB 71.8735%-127 - C1 -1VJO 5.1 ?
60 HHSearch 69.6438%-109 - C1 -1VJO 5.1 ?
37 PsiBlast_CBE 68.8331% -95 - C1 -4I8A - SPYA_HUMAN -
29 PsiBlast_CBE 68.5632% -95 - C1 -4KYO - SPYA_HUMAN -
39 PsiBlast_CBE 68.4331% -96 - C1 -4I8A - SPYA_HUMAN -
22 PsiBlast_CBE 68.3134% -89 - C1 -2CH2 - ? -
30 PsiBlast_CBE 68.1932% -93 - C1 -4KXK - SPYA_HUMAN -
17 PsiBlast_PDB 68.0231% -94 - C1 -3R9A - SPYA_HUMAN -
14 PsiBlast_PDB 67.9932% -94 - C1 -1H0C 2.7 SPYA_HUMAN
18 PsiBlast_PDB 67.9331% -95 - C1 -4I8A - SPYA_HUMAN -
38 PsiBlast_CBE 67.8431% -96 - C1 -4I8A - SPYA_HUMAN -
28 PsiBlast_CBE 67.8131% -93 - C1 -2YOB - SPYA_HUMAN -
36 PsiBlast_CBE 67.7931% -92 - C1 -3R9A - SPYA_HUMAN -
4 PsiBlast_PDB 67.7234% -88 - C1 -2CH1 - ? -
13 PsiBlast_PDB 67.5732% -93 - C1 -4KXK - SPYA_HUMAN -
24 PsiBlast_CBE 67.5034% -90 - C1 -2CH2 - ? -
11 PsiBlast_PDB 67.3232% -93 - C1 -4CBR 1.8 SPYA_HUMAN
19 PsiBlast_PDB 66.7931% -92 - C1 -1J04 3.1 SPYA_HUMAN
51 HHSearch 62.4532% -77 - C1 -2HUF 2.6 ?
7 PsiBlast_PDB 62.3531% -78 - C1 -2HUF 2.6 ?
8 PsiBlast_PDB 62.1431% -77 - C1 -2HUI 3.2 ?
9 PsiBlast_PDB 61.8831% -77 - C1 -2HUU 1.9 ?
35 PsiBlast_CBE 61.8631% -78 - C1 -2HUF 2.4 ?
33 PsiBlast_CBE 61.7331% -77 - C1 -2HUU 2.5 ?
34 PsiBlast_CBE 61.5831% -78 - C1 -2HUI 3.2 ?
42 PsiBlast_CBE 57.0632% -34 - C1 -2YRI 4.0 ?
20 PsiBlast_PDB 57.0032% -34 - C1 -2YRI 6.1 ?
40 PsiBlast_CBE 56.4532% -33 - C1 -2YRR 4.2 ?
41 PsiBlast_CBE 56.2232% -33 - C1 -2YRR 3.9 ?
54 HHSearch 53.2732% -30 - C1 -2YRR Error ?