@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu32750: (2016-07-24 )
MINLQDVSKVYKSKHGDVNAVQNVSLSIKKGEIFGIIGYSGAGKSSLIRLLNGLEKPTSGTVEVAGTKINEVNGRGLRKARHEISMIFQHFNLLWSRTVRDNIMFPLEIAGVKKSERIKRANELIKLVGLEGKEKSYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPQTTDSILDLLSDINERLGLTIVLITHEMHVIRKICNRVAVMENGKVVEEGEVLDVFKNPKEQMTKRFVQQVTEPEETKETLQHLLDDTASGKMVQLTFVGESAEQPLITEMIRNFNVSVNILQGKISQTKDGAYGSLFIHIDGDEEEVQNVIRFINDKQVKAEVITNV

Atome Classification :

(36 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_H_8(2FGJ)

[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




ADP_B_2(2FFA)

[Raw transfer]




ATP_D_12(1XEF)

[Raw transfer]




12D_A_2(3B5J)

[Raw transfer]




ADP_B_2(2FFB)

[Raw transfer]




ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_A_3(3FVQ)
FBPC_NEIG1
[Raw transfer]




ATP_C_3(1VCI)
?
[Raw transfer]




21 PsiBlast_CBE 88.0048% -99 - C1 -3TUZ - METN_ECOLI -
3 PsiBlast_PDB 87.8148% -98 - C1 -3TUZ - METN_ECOLI -
24 PsiBlast_CBE 87.5048%-100 - C1 -3TUI - METN_ECOLI -
2 PsiBlast_PDB 86.8748% -93 - C1 -3TUI - METN_ECOLI -
25 PsiBlast_CBE 86.4048% -89 - C1 -3TUI - METN_ECOLI -
114 HHSearch 86.3348%-101 - C1 -3TUI - METN_ECOLI -
26 PsiBlast_CBE 85.5848% -88 - C1 -3TUI - METN_ECOLI -
22 PsiBlast_CBE 84.7848% -89 - C1 -3TUZ - METN_ECOLI -
23 PsiBlast_CBE 84.7748% -95 - C1 -3TUZ - METN_ECOLI -
4 PsiBlast_PDB 84.6347% -99 - C1 -3TUJ - METN_ECOLI -
1 PsiBlast_PDB 81.2148% -95 - C1 -3DHW - METN_ECOLI -
104 Fugue 75.6747% 15 - C1 -3TUZ - METN_ECOLI -
5 PsiBlast_PDB 54.6740% -47 - C1 -4U00 - ? -
29 PsiBlast_CBE 54.3940% -45 - C1 -4U02 - ? -
117 HHSearch 54.2334%-128 - C1 -4YER - ? -
65 PsiBlast_CBE 54.1031%-135 - C1 -4KI0 - MALK_ECOLI -
27 PsiBlast_CBE 53.8440% -43 - C1 -4U02 - ? -
45 PsiBlast_CBE 53.3234%-122 - C1 -1Z47 - ? -
6 PsiBlast_PDB 53.2940% -45 - C1 -4U02 - ? -
68 PsiBlast_CBE 53.1731%-139 - C1 -3PUZ - MALK_ECOLI -
59 PsiBlast_CBE 50.4132%-126 - C1 -1VCI 3.4 ?
121 HHSearch 46.1930%-116 - C1 -3FVQ 7.2 FBPC_NEIG1
101 PsiBlast_CBE 37.6233% -26 - C1 -2FGJ 5.6 HLYBP_ECOLX
103 PsiBlast_CBE 37.3233% -28 - C1 -1XEF 5.6
90 PsiBlast_CBE 36.8934% -34 - C1 -2FF7 5.0
102 PsiBlast_CBE 35.6033% -33 - C1 -2FFA 5.2
89 PsiBlast_CBE 35.4334% -35 - C1 -2PMK 5.1
98 PsiBlast_CBE 35.3433% -25 - C1 -2FGJ 5.4
93 PsiBlast_CBE 35.1933% -29 - C1 -2FGK 5.9
92 PsiBlast_CBE 35.1533% -35 - C1 -3B5J 5.1
97 PsiBlast_CBE 34.7233% -32 - C1 -2FFB 5.0
99 PsiBlast_CBE 34.4033% -26 - C1 -2FGJ 5.7 HLYBP_ECOLX
100 PsiBlast_CBE 34.3633% -31 - C1 -2FGJ 6.0 HLYBP_ECOLX
96 PsiBlast_CBE 34.1933% -27 - C1 -2FGK 6.0 HLYBP_ECOLX
94 PsiBlast_CBE 33.8033% -23 - C1 -2FGK 5.2 HLYBP_ECOLX
95 PsiBlast_CBE 33.5433% -27 - C1 -2FGK 6.0 HLYBP_ECOLX