@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu32820: (2016-07-24 )
MAKKAADVQKGGGFLIEDVTYDQMYTPEDFTDEHKMIAKTTEDYIEQDVLPHIDDIENHQFEHSVRLLKKAGELGLLGADVPEEYGGLGLDKISSALITEKFSRAGSFSLSYGAHVGIGSLPIVFFGSEEQKKKYLPGLASGEKIAAYALTEPGSGSDALGAKTTAVLNEAGTHYVLTGEKQWITNSAFADVFVVYAKVDGDKFSAFIVEKEFPGVSTGPEEKKMGIKGSSTRTLILDQAEVPKENLLGEIGKGHVIAFNILNIGRYKLAVGTIGASKRVIELSAAYANQRRQFKTPIAGFSLTQEKIGTMASRLYAMESSVYRTVGLFEDNMSQFTAEDLKDGRQIAKSIAEYAIECSLNKVFGSETLDYIVDEGVQIHGGYGFMQEYEVERAYRDSRINRIFEGTNEINRLIVPSTFLKKALKGELPLFEKAQSLQEELMMLMPEEPGSGVLEQEKYIVKQAKKIALFAAGLAAQKYGKAIDREQEILVNVADIVSNVYAMESAVLRTEKAIAAQGAEKAAQKVLYTEIFVQEAFNEIEAHAKESLIAMEEGDSLRMMLSALRKLTRVTPKNVIQKKREAAAGIFEAEKYTV

Atome Classification :

(36 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

EDO_A_2(2UXW)
ACADV_HUMAN
[Raw transfer]



FAD_A_3(3B96)
ACADV_HUMAN
[Raw transfer]



FAD_A_4(2UXW)
ACADV_HUMAN
[Raw transfer]



FAD_B_4(2Z1Q)
?
[Raw transfer]



FAD_A_4(2UXW)
ACADV_HUMAN
[Raw transfer]



FAD_A_4(2UXW)
ACADV_HUMAN
[Raw transfer]



FAD_B_4(2Z1Q)
?
[Raw transfer]



FAD_A_3(2Z1Q)
?
[Raw transfer]



FAD_B_8(4L1F)
?
[Raw transfer]



FAD_A_9(3MDE)
ACADM_PIG
[Raw transfer]



FAD_A_9(1BUC)
ACDS_MEGEL
[Raw transfer]



FDA_A_3(4N5F)
?
[Raw transfer]



FAD_A_5(2PG0)
?
[Raw transfer]



FAD_A_5(3MDD)
ACADM_PIG
[Raw transfer]



FAD_A_5(2PG0)
?
[Raw transfer]



FAD_B_7(3MDD)
ACADM_PIG
[Raw transfer]



FAD_B_7(2PG0)
?
[Raw transfer]



FAD_B_5(1UKW)
?
[Raw transfer]



FAD_B_11(1BUC)
ACDS_MEGEL
[Raw transfer]



FAD_A_4(1UKW)
?
[Raw transfer]



FAD_A_3(3NF4)
?
[Raw transfer]



FAD_D_4(2DVL)
?
[Raw transfer]



FAD_A_3(4L1F)
?
[Raw transfer]



FAD_B_11(3MDE)
ACADM_PIG
[Raw transfer]



FAD_I_9(1JQI)
ACADS_RAT
[Raw transfer]



FDA_B_15(4N5F)
?
[Raw transfer]



CAA_G_7(1JQI)
ACADS_RAT
[Raw transfer]
1 PsiBlast_PDB 96.6874% -66 - C2 -3OWA - ? -
111 HHSearch 89.9975% -37 - C2 -3OWA - ? -
2 PsiBlast_PDB 87.0854% -73 - C2 -2Z1Q - ? -
101 Fugue 85.5755% -77 - C2 -2Z1Q 8.4 ?
21 PsiBlast_CBE 85.1054% -78 - C2 -2Z1Q 8.4 ?
112 HHSearch 83.7855% -59 - C2 -2Z1Q 9.3 ?
70 PsiBlast_CBE 51.5331% -29 - C2 -1UDY - ACADM_PIG -
68 PsiBlast_CBE 51.0031% -29 - C2 -1UDY - ACADM_PIG -
113 HHSearch 49.9533% 23 - C2 -2UXW 10.8 ACADV_HUMAN
72 PsiBlast_CBE 49.9331% -26 - C2 -3MDE 4.7 ACADM_PIG
71 PsiBlast_CBE 49.3631% -28 - C2 -1UDY - ACADM_PIG -
35 PsiBlast_CBE 48.7031% -34 - C2 -1RX0 - ACAD8_HUMAN -
36 PsiBlast_CBE 47.8031% -34 - C2 -1RX0 - ACAD8_HUMAN -
74 PsiBlast_CBE 47.7831% -25 - C2 -3MDD 5.4 ACADM_PIG
73 PsiBlast_CBE 47.6631% -25 - C2 -3MDE 6.7 ACADM_PIG
102 Fugue 47.6432% 31 - C2 -2UXW 10.8 ACADV_HUMAN
37 PsiBlast_CBE 47.3131% -34 - C2 -1RX0 - ACAD8_HUMAN -
69 PsiBlast_CBE 47.1931% -27 - C2 -1UDY - ACADM_PIG -
75 PsiBlast_CBE 47.0431% -26 - C2 -3MDD 4.2 ACADM_PIG
130 HHSearch 46.9534% -26 - C2 -2PG0 4.4 ?
4 PsiBlast_PDB 45.9734% 26 - C2 -3B96 9.8 ACADV_HUMAN
100 PsiBlast_CBE 45.6934% -16 - C2 -2DVL 9.4 ?
17 PsiBlast_PDB 45.4933% -22 - C2 -2PG0 9.6 ?
3 PsiBlast_PDB 45.2734% 31 - C2 -2UXW 10.8 ACADV_HUMAN
53 PsiBlast_CBE 45.0333% -22 - C2 -2PG0 9.1 ?
90 PsiBlast_CBE 43.2532% 16 - C2 -1BUC 5.7 ACDS_MEGEL
43 PsiBlast_CBE 42.1533% -4 - C2 -1UKW 8.8 ?
13 PsiBlast_PDB 41.5833% -5 - C2 -1UKW 9.3 ?
30 PsiBlast_CBE 41.1335% 0 - C2 -4L1F 7.0 ?
119 HHSearch 41.0030% -7 - C2 -3NF4 8.7 ?
7 PsiBlast_PDB 40.9035% 2 - C2 -4L1F 6.5 ?
91 PsiBlast_CBE 40.2032% 15 - C2 -1BUC 4.7 ACDS_MEGEL
5 PsiBlast_PDB 39.5335% 13 - C2 -1JQI 6.0 ACADS_RAT
22 PsiBlast_CBE 38.8335% 8 - C2 -1JQI 6.1 ACADS_RAT
9 PsiBlast_PDB 37.2033% 2 - C2 -4N5F 4.9 ?
34 PsiBlast_CBE 35.4933% -5 - C2 -4N5F 3.7 ?