@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu32840: (2016-07-25 )
MHKHIRKAAVLGSGVMGSGIAAHLANIGIPVLLLDIVPNDLTKEEEKKGLTKDSSEVRSRLSRQAMKKLLKQKPAPLTSAKNTSYITPGNLEDDAEKLKEADWIIEVVVENLEVKKKIFALVDEHRKTGSIVSSNTSGISVQEMAEGRSDDFKAHFLGTHFFNPARYLKLLEIIPIKETDPDILKFMTAFGENVLGKGVVTAKDTPNFIANRIGTYGLLVTVQEMLKGGYQVGEVDSITGPLIGRPKSATFRTLDVVGLDTFAHVARNVYDKADGDEKEVFRIPSFMNDMLEKGWIGSKAGQGFYKKEGKTIYELDPVTLTYGERTKMKSPALEAAKQAKGTKAKMKALIYSDDRAGRLLWNITSQTLLYSAELLGEIADDIHAIDQAMKWGFGWELGPFEMWDAIGLKQSAEKLEQLGADMPGWIKEMLDKGNETFYIKENGTVFYYDRGEYRAVKENKKRIHLQALKETKGVIAKNSGASLIDLGDDVALLEFHSKSNAIGLDIIQMIHKGLEETERNYKGLVIGNQGKNFCVGANLAMILMEVQDDNFLEVDFVIRRFQETMMKIKYSAKPVVAAPFGMTLGGGTEACLPAARIQAASEAYMGLVESGVGLIPGGGGNKELYINHLRRGHDPMNAAMKTFETIAMAKVSASAQEAREMNILKETDQISVNQDHLLYDAKQLAASLYDTGWRPPVKEKVKVPGETGYAALLLGAEQMKLSGYISEHDFKIAKKLAYVIAGGKVPFGTEVDEEYLLEIEREAFLSLSGEAKSQARMQHMLVKGKPLRN

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_E_5(1F0Y)
HCDH_HUMAN
[Raw transfer]




NAI_A_3(1F17)
HCDH_HUMAN
[Raw transfer]




NAD_C_3(1LSO)
HCDH_HUMAN
[Raw transfer]




NAD_A_3(3HAD)
HCDH_HUMAN
[Raw transfer]




NAD_E_5(3HDH)
HCDH_PIG
[Raw transfer]




95 HHSearch 78.8824% -12 - C2 -3MOG - PAAH_ECOLI -
101 HHSearch 75.5123% -1 - C2 -3ZWC - ECHP_RAT -
98 HHSearch 75.4424% -1 - C- -1ZCJ - ECHP_RAT -
2 PsiBlast_PDB 73.8931% -88 - C2 -4J0F - HCDH1_CAEEL -
1 PsiBlast_PDB 72.9931% -83 - C2 -4J0E - HCDH1_CAEEL -
9 PsiBlast_PDB 72.8229% -88 - C2 -1LSO 9.0 HCDH_HUMAN
11 PsiBlast_PDB 72.6929% -76 - C2 -1IL0 - HCDH_HUMAN -
7 PsiBlast_PDB 72.6829% -82 - C2 -3HAD 8.4 HCDH_HUMAN
5 PsiBlast_PDB 72.2029% -85 - C2 -1F14 - HCDH_HUMAN -
12 PsiBlast_PDB 72.1229% -86 - C2 -1LSJ - HCDH_HUMAN -
10 PsiBlast_PDB 71.7429% -80 - C2 -1M76 - HCDH_HUMAN -
6 PsiBlast_PDB 71.7129% -84 - C2 -1F17 9.4 HCDH_HUMAN
8 PsiBlast_PDB 71.4429% -79 - C2 -1F0Y - HCDH_HUMAN -
4 PsiBlast_PDB 70.8629% -85 - C2 -1F12 - HCDH_HUMAN -
13 PsiBlast_PDB 70.7529% -81 - C2 -1M75 - HCDH_HUMAN -
97 HHSearch 69.3822% -33 - C2 -3K6J - ? -
100 HHSearch 68.1523% 10 - C2 -4B3H - ? -
108 HHSearch 67.7731% -92 - C2 -1ZEJ - ? -
106 HHSearch 67.0528% -36 * C2 *4R1N - ? -
96 HHSearch 66.7124% -35 - C2 -2WTB - MFP2_ARATH -
113 HHSearch 61.4830% 9 - C2 -1F0Y 10.2 HCDH_HUMAN
3 PsiBlast_PDB 59.8930% 11 - C2 -3HDH 9.4 HCDH_PIG