@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu32980: (2016-07-25 )
MNKKIAIVTGASSGFGLLAAVKLARSFFVIATSRQPEKAEQLRELAAAHNVSDSIHITALDVTDEQSIVSFGKAVSAYAPIDLLVNNAGTAYGGFIEDVPMEHFRQQFETNVFGVIHVTKTVLPYIRKHGGAKIINVSSISGLTGFPALSPYVSSKHALEGFSESLRIELLPFGIETALIEPGSYKTSIWSTSLSNFMSVPADDSAYHQYYKKILSYVQKNGEESGDPQEVADLIYQLATKQHIKNLRYPIGKGIKLTLLFRSLFPWSAWESILKKKLFS

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAP_C_7(3RKU)
YM71_YEAST
[Raw transfer]




NAP_A_5(3RKU)
YM71_YEAST
[Raw transfer]




NAP_B_6(3RKU)
YM71_YEAST
[Raw transfer]




NAP_D_8(3RKU)
YM71_YEAST
[Raw transfer]




NAP_B_7(4QEC)
?
[Raw transfer]




NAP_A_3(4QEC)
?
[Raw transfer]




NAP_B_6(4QED)
?
[Raw transfer]




NAP_A_3(1QYW)
DHB1_HUMAN
[Raw transfer]




MPD_A_21(4H15)
?
[Raw transfer]




CBO_D_8(1HDC)
HSD_STREX
[Raw transfer]




20 PsiBlast_PDB 89.9032% -28 - C1 -1FDT - DHB1_HUMAN -
3 PsiBlast_PDB 89.6332% -34 - C1 -1A27 - DHB1_HUMAN -
9 PsiBlast_PDB 88.9032% -29 - C1 -1JTV - DHB1_HUMAN -
8 PsiBlast_PDB 88.8532% -29 - C1 -1I5R - DHB1_HUMAN -
7 PsiBlast_PDB 88.6832% -27 - C1 -3DHE - DHB1_HUMAN -
34 PsiBlast_CBE 88.3332% -30 - C1 -1FDU - DHB1_HUMAN -
6 PsiBlast_PDB 88.1032% -23 - C1 -1DHT - DHB1_HUMAN -
19 PsiBlast_PDB 88.0732% -34 - C1 -1FDS - DHB1_HUMAN -
15 PsiBlast_PDB 87.5132% -33 - C1 -3HB4 - DHB1_HUMAN -
16 PsiBlast_PDB 87.2932% -30 - C1 -3HB5 - DHB1_HUMAN -
28 PsiBlast_CBE 87.2532% -30 - C1 -3KLM - DHB1_HUMAN -
14 PsiBlast_PDB 87.2532% -30 - C1 -3DEY - DHB1_HUMAN -
5 PsiBlast_PDB 87.1732% -34 - C1 -1EQU - DHB1_HUMAN -
10 PsiBlast_PDB 87.1532% -26 - C1 -1QYV - DHB1_HUMAN -
11 PsiBlast_PDB 85.7932% -28 - C1 -1QYW 5.3 DHB1_HUMAN
32 PsiBlast_CBE 85.7432% -34 - C1 -1FDV - DHB1_HUMAN -
36 PsiBlast_CBE 85.3732% -27 - C1 -1FDU - DHB1_HUMAN -
30 PsiBlast_CBE 85.1432% -33 - C1 -1FDV - DHB1_HUMAN -
4 PsiBlast_PDB 85.0232% -30 - C1 -1FDW - DHB1_HUMAN -
17 PsiBlast_PDB 84.9432% -28 - C1 -3KLP - DHB1_HUMAN -
42 PsiBlast_CBE 54.4732% -34 - C1 -4QEC 11.4 ?
38 PsiBlast_CBE 54.2433% 15 - C1 -3RKU 11.4 YM71_YEAST
40 PsiBlast_CBE 54.2133% 16 - C1 -3RKU 11.3 YM71_YEAST
41 PsiBlast_CBE 53.9432% -35 - C1 -4QEC 11.6 ?
43 PsiBlast_CBE 53.2732% -32 - C1 -4QED 11.2 ?
39 PsiBlast_CBE 53.2433% 17 - C1 -3RKU 11.4 YM71_YEAST
37 PsiBlast_CBE 53.2033% 17 - C1 -3RKU 11.6 YM71_YEAST
84 PsiBlast_CBE 41.9134% -14 - C1 -1HDC 4.0 HSD_STREX