@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu33160: (2016-07-25 )
MKAEGLSGGYGDSRLINNVSLTVEKGEFLGILGPNGSGKTTLLHLLTGTLPAKKGRVYLAGKLLADYKPKELAQIMAVLPQKMDQAFTFTVEETVAFGRYPFQTGLFRQQTEKGEAIVQEAMEQTGVADFAQKPIRELSGGEQQRVYLAQALAQQPRILFLDEPTNFLDLAYQKDLLDLIKRLTRESGLAAVSVFHDLNTASLYCDGLMFMKNGTAGPKQKPEYAVTEQSIKAVYDTDVTALVHQSSPKPMIVIQPEKDSVKRQSIPFEALLQAGRDDILLQTEIPLRTLSSTPIGAGFSWSRTLIHKRLPDQPDPIEGLTACLSESGFQLQETCAMASSERLDRFVYRTYEDGELSVFICVQTGFSIWILINGYAADQFFIKALMAAEAERTKVLGDGGGTGDILIAATQTQQSENIEQRLNQLIKKGTAECIKEAAELFE

Atome Classification :

(31 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_6(1L2T)
Y796_METJA
[Raw transfer]




ADP_C_11(4HLU)
ECFA1_THEMA
[Raw transfer]




ATP_A_5(1L2T)
Y796_METJA
[Raw transfer]




ADP_D_7(4HLU)
ECFA1_THEMA
[Raw transfer]




POP_A_9(2D62)
?
[Raw transfer]




ADP_A_3(3TIF)
Y796_METJA
[Raw transfer]




ADP_A_3(1F3O)
Y796_METJA
[Raw transfer]




ADP_A_2(4U00)
?
[Raw transfer]




ADP_B_8(3TIF)
Y796_METJA
[Raw transfer]




ADP_A_4(1G6H)
LIVG_METJA
[Raw transfer]




LMT_B_4(4MKI)
ECFA2_CALS4
[Raw transfer]




LMT_A_7(4MKI)
ECFA2_CALS4
[Raw transfer]




LMT_A_7(4MKI)
ECFA2_CALS4
[Raw transfer]




21 PsiBlast_CBE 81.3940% -60 - C2 -4G1U - HMUV_YERPE -
1 PsiBlast_PDB 80.9940% -61 - C2 -4G1U - HMUV_YERPE -
44 HHSearch 67.0730%-118 - C2 -2YYZ - ? -
39 HHSearch 66.6128%-117 - C2 -1V43 - ? -
15 PsiBlast_PDB 65.3726%-112 - C2 -1VPL - ? -
8 PsiBlast_PDB 64.6431% -49 - C2 -4U02 - ? -
43 HHSearch 64.2025%-126 - C2 -3RLF - MALK_ECOLI -
7 PsiBlast_PDB 64.0531% -42 - C2 -4U00 5.5 ?
26 PsiBlast_CBE 63.6031% -50 - C2 -4U02 - ? -
25 PsiBlast_CBE 62.8231% -48 - C2 -4U02 - ? -
62 Fugue 62.1023% 33 - C2 -1Z47 - ? -
40 HHSearch 62.0631% -6 - C2 -1Z47 - ? -
37 HHSearch 61.6826%-124 - C2 -4TQU - ? -
46 HHSearch 61.5631%-105 - C2 -3D31 - ? -
38 HHSearch 61.4129%-114 - C2 -2IT1 - ? -
45 HHSearch 60.4227%-118 - C2 -4YER - ? -
24 PsiBlast_CBE 60.1731% -41 - C2 -4U02 - ? -
14 PsiBlast_PDB 60.0228% -47 - C2 -1G6H 4.8 LIVG_METJA
60 Fugue 58.0123% 32 - C2 -3TUZ - METN_ECOLI -
22 PsiBlast_CBE 57.2433% -30 - C2 -1Z47 - ? -
53 HHSearch 49.6532% 53 - C2 -4MKI 2.3 ECFA2_CALS4
13 PsiBlast_PDB 49.1531% -7 - C2 -3TIF 4.3 Y796_METJA
30 PsiBlast_CBE 48.2131% -6 - C2 -3TIF 4.4 Y796_METJA
29 PsiBlast_CBE 45.7431% -3 - C2 -1L2T 4.1 Y796_METJA
18 PsiBlast_PDB 44.2031% 4 - C2 -1F3O 3.8 Y796_METJA
12 PsiBlast_PDB 43.5431% -2 - C2 -1L2T 4.1 Y796_METJA
27 PsiBlast_CBE 43.4833% -23 - C2 -4MKI 2.1 ECFA2_CALS4
9 PsiBlast_PDB 42.7333% -24 - C2 -4MKI 2.3 ECFA2_CALS4
17 PsiBlast_PDB 37.9630% 3 - C2 -2D62 3.1 ?
34 PsiBlast_CBE 36.8831% -33 - C2 -4HLU 5.5 ECFA1_THEMA
33 PsiBlast_CBE 35.3031% -33 - C2 -4HLU 6.8 ECFA1_THEMA