@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu33610: (2016-07-26 )
MEKEAFMEKLLSFMKEEAYKPLTVQELEEMLNITEAEEFKELVKALVALEEKGLIVRTRSDRYGIPEKMNLIKGKISAHAKGFAFLLPEDTSLSDVFIPPNELNTAMNGDIVMVRLNSQSSGSRQEGTVIRILERAIQRVVGTYTETRNFGFVIPDDKKITSDIFIPKNGKNGAAEGHKVVVKLTSYPEGRMNAEGEVETILGHKNDPGIDILSVIHKHGLPGEFPADAMEQASSTPDTIDEKDLKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDDGSYKLGVHIADVSHYVTENSPIDKEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINSQGQVTEHEIFQSVIKTTERMTYSDVNKILVDDDEELKQKYEPLVPMFKDMERLAQILRDKRMDRGAVDFDFKEAKVLVDDEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRIHEEPNAEKLQKFLEFVTTFGYVVKGTAGNIHPRALQSILDAVRDRPEETVISTVMLRSMKQAKYDPQSLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYLINGKVDEATQEKWAERLPDIAEHTSSMERRAVDAERETDDLKKAEYMLDKIGEEFDGMISSVTNFGMFVELPNTIEGLVHVSFMTDDYYRFDEQHFAMIGERTGNVFRIGDEITVKVVDVNKDERNIDFEIVGMKGTPRRPRELDSSRSRKRGKPARKRVQSTNTPVSPAPSEEKGEWFTKPKKKKKKRGFQNAPKQKRKKKK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_B_1(2VNU)
RRP44_YEAST
[Raw transfer]
-
CHAIN_D_4(4PMW)
DI3L2_MOUSE
[Raw transfer]
-
31 HHSearch 89.3328% 0 - C- -4PMW - DI3L2_MOUSE -
30 HHSearch 74.3228% 36 - C3 -4IFD - RRP44_YEAST -
57 Fugue 73.7024% 36 - C3 -2WP8 - RRP44_YEAST -
28 HHSearch 72.0024% -1 - C3 -2ID0 - RNB_ECOLI -
8 PsiBlast_PDB 67.9126% 20 - C3 -2IX0 - RNB_ECOLI -
9 PsiBlast_PDB 67.4426% 22 - C3 -2IX1 - RNB_ECOLI -
10 PsiBlast_PDB 67.1425% 32 - C3 -2ID0 - RNB_ECOLI -
2 PsiBlast_PDB 64.0331% 0 - C- -4PMW - DI3L2_MOUSE -
3 PsiBlast_PDB 60.5630% -19 - C3 -5C0W - RRP44_YEAST -
29 HHSearch 60.2328% 50 - C3 -4RO1 - DI3L2_SCHPO -
7 PsiBlast_PDB 60.0329% -30 - C3 -2VNU 18.3 RRP44_YEAST
5 PsiBlast_PDB 59.9730% -20 - C3 -5C0X - RRP44_YEAST -
4 PsiBlast_PDB 59.8030% -20 - C3 -4IFD - RRP44_YEAST -
6 PsiBlast_PDB 59.5130% -12 - C3 -2WP8 - RRP44_YEAST -
21 PsiBlast_CBE 58.9031% 2 - C3 -4PMW 10.3 DI3L2_MOUSE
1 PsiBlast_PDB 55.4632% 27 - C3 -4RO1 - DI3L2_SCHPO -
33 HHSearch 49.9322% 36 - C3 -2R7D - ? -
11 PsiBlast_PDB 45.0824% -28 - C3 -2R7D - ? -
12 PsiBlast_PDB 43.3424% -24 - C3 -2R7F - ? -
36 HHSearch 39.8328%-166 - C3 -2K4K - GS13_BACSU -