@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu33810: (2016-07-26 )
MTKIKWLGAFALVFVMLLGGCSLPGLGGASDDTIKIGAQSMTESEIVANMIAQLIEHDTDLNTALVKNLGSNYVQHQAMLGGDIDISATRYSGTDLTSTLGKEAEKDPKKALNIVQNEFQKRFSYKWFDSYGFDNTYAFTVTKKFAEKEHINTVSDLKKNASQYKLGVDNAWLKRKGDGYKGFVSTYGFEFGTTYPMQIGLVYDAVKNGKMDAVLAYSTDGRIKAYDLKILKDDKRFFPPYDCSPVIPEKVLKEHPELEGVINKLIGQIDTETMQELNYEVDGKLKEPSVVAKEFLEKHHYFD

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

DCK_B_4(3PPO)
OPUCC_BACSU
[Raw transfer]




4CS_B_4(3PPR)
OPUCC_BACSU
[Raw transfer]




BET_A_3(3PPP)
OPUCC_BACSU
[Raw transfer]




4CS_A_3(3PPR)
OPUCC_BACSU
[Raw transfer]




BET_B_4(3PPP)
OPUCC_BACSU
[Raw transfer]




DCK_A_3(3PPO)
OPUCC_BACSU
[Raw transfer]




PGE_A_3(3O66)
?
[Raw transfer]




PGE_A_3(3O66)
?
[Raw transfer]




1 PsiBlast_PDB 94.02100% -68 - C2 -3PPN - OPUCC_BACSU -
2 PsiBlast_PDB 93.60100% -67 - C2 -3PPO 3.4 OPUCC_BACSU
4 PsiBlast_PDB 93.47100% -72 - C2 -3PPQ - OPUCC_BACSU -
3 PsiBlast_PDB 93.24100% -69 - C2 -3PPP 3.0 OPUCC_BACSU
23 PsiBlast_CBE 93.04100% -70 - C2 -3PPP 3.1 OPUCC_BACSU
5 PsiBlast_PDB 92.89100% -69 - C2 -3PPR 3.3 OPUCC_BACSU
22 PsiBlast_CBE 92.71100% -70 - C2 -3PPQ - OPUCC_BACSU -
21 PsiBlast_CBE 92.52100% -71 - C2 -3PPR 3.2 OPUCC_BACSU
24 PsiBlast_CBE 92.01100% -68 - C2 -3PPO 3.1 OPUCC_BACSU
6 PsiBlast_PDB 85.6772% -71 - C2 -3R6U - OPUBC_BACSU -
37 HHSearch 71.3569% 47 - C2 -3R6U - OPUBC_BACSU -
7 PsiBlast_PDB 69.0756% 71 - C2 -3O66 2.4 ?
34 HHSearch 67.3256% 58 - C2 -3O66 Error ?
49 Fugue 61.3632% 53 * C2 *1SW5 - ? -
26 PsiBlast_CBE 61.1432% 53 - C2 -1SW5 - ? -
29 HHSearch 60.8832% 51 - C2 -1SW5 - ? -
9 PsiBlast_PDB 60.8232% 54 - C2 -1SW5 - ? -
27 PsiBlast_CBE 60.8132% 56 - C2 -1SW5 - ? -
25 PsiBlast_CBE 60.0232% 54 - C2 -1SW5 - ? -
11 PsiBlast_PDB 59.8431% 55 - C2 -3MAM - ? -