@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu33940: (2016-07-27 )
MAVKVGINGFGRIGRNVFRAALNNPEVEVVAVNDLTDANMLAHLLQYDSVHGKLDAEVSVDGNNLVVNGKTIEVSAERDPAKLSWGKQGVEIVVESTGFFTKRADAAKHLEAGAKKVIISAPANEEDITIVMGVNEDKYDAANHDVISNASCTTNCLAPFAKVLNDKFGIKRGMMTTVHSYTNDQQILDLPHKDYRRARAAAENIIPTSTGAAKAVSLVLPELKGKLNGGAMRVPTPNVSLVDLVAELNQEVTAEEVNAALKEAAEGDLKGILGYSEEPLVSGDYNGNKNSSTIDALSTMVMEGSMVKVISWYDNESGYSNRVVDLAAYIAKKGL

Atome Classification :

(45 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_O_12(1RM4)
G3PA_SPIOL
[Raw transfer]




NAD_D_4(1DC6)
G3P1_ECOLI
[Raw transfer]




NAD_A_3(3CPS)
?
[Raw transfer]




NAD_A_3(4BOY)
?
[Raw transfer]




NAD_C_3(1DC6)
G3P1_ECOLI
[Raw transfer]




NAD_B_4(3CPS)
?
[Raw transfer]




NAD_A_3(3CPS)
?
[Raw transfer]




NAD_A_3(2EP7)
G3P_AQUAE
[Raw transfer]




NAD_A_3(2EP7)
G3P_AQUAE
[Raw transfer]




NAD_A_3(4LSM)
?
[Raw transfer]




NAD_E_5(1VC2)
?
[Raw transfer]




NAD_A_3(3PYM)
G3P3_YEAST
[Raw transfer]




NAD_O_3(3H9E)
G3PT_HUMAN
[Raw transfer]




NAD_P_4(1GAD)
G3P1_ECOLI
[Raw transfer]




NAD_B_7(4P8R)
?
[Raw transfer]




NAD_B_4(2EP7)
G3P_AQUAE
[Raw transfer]




NAD_C_9(4P8R)
?
[Raw transfer]




NAD_A_5(4P8R)
?
[Raw transfer]




NAD_O_3(1GAD)
G3P1_ECOLI
[Raw transfer]




NAD_O_13(1HDG)
G3P_THEMA
[Raw transfer]




NAD_O_13(1HDG)
G3P_THEMA
[Raw transfer]




NAD_Q_15(1HDG)
G3P_THEMA
[Raw transfer]




NAD_P_7(1GAE)
G3P1_ECOLI
[Raw transfer]




NAD_O_5(1GAE)
G3P1_ECOLI
[Raw transfer]




MES_Y_25(1S7C)
G3P1_ECOLI
[Raw transfer]




29 PsiBlast_CBE 96.3684% -88 - C2 -1GD1 - G3P_GEOSE -
33 PsiBlast_CBE 96.1983% -85 - C2 -1NPT - G3P_GEOSE -
2 PsiBlast_PDB 96.0984% -86 - C2 -2GD1 - G3P_GEOSE -
32 PsiBlast_CBE 95.8883% -81 - C2 -1NQA - G3P_GEOSE -
9 PsiBlast_PDB 95.7983% -90 - C2 -2DBV - G3P_GEOSE -
24 PsiBlast_CBE 95.6784% -84 - C2 -2GD1 - G3P_GEOSE -
21 PsiBlast_CBE 95.6384% -84 - C2 -3CMC - G3P_GEOSE -
28 PsiBlast_CBE 95.5284% -85 - C2 -1GD1 - G3P_GEOSE -
25 PsiBlast_CBE 95.4984% -82 - C2 -2GD1 - G3P_GEOSE -
1 PsiBlast_PDB 95.4984% -85 - C2 -1GD1 - G3P_GEOSE -
23 PsiBlast_CBE 95.4484% -83 - C2 -3CMC - G3P_GEOSE -
43 PsiBlast_CBE 95.3883% -89 - C2 -2DBV - G3P_GEOSE -
8 PsiBlast_PDB 95.3883% -88 - C2 -1DBV - G3P_GEOSE -
4 PsiBlast_PDB 95.2983% -83 - C2 -1NPT - G3P_GEOSE -
53 PsiBlast_CBE 95.2782% -85 - C2 -3DBV - G3P_GEOSE -
30 PsiBlast_CBE 95.2483% -84 - C2 -1NQA - G3P_GEOSE -
45 PsiBlast_CBE 95.2083% -85 - C2 -1DBV - G3P_GEOSE -
5 PsiBlast_PDB 95.1883% -83 - C2 -1NQA - G3P_GEOSE -
26 PsiBlast_CBE 95.1784% -85 - C2 -2GD1 - G3P_GEOSE -
128 HHSearch 95.1384% -83 - C2 -3CMC - G3P_GEOSE -
76 PsiBlast_CBE 78.4260% -83 - C2 -1VC2 7.8 ?
13 PsiBlast_PDB 72.7856% -60 - C2 -2EP7 9.4 G3P_AQUAE
61 PsiBlast_CBE 72.7556% -41 - C2 -1DC6 8.9 G3P1_ECOLI
17 PsiBlast_PDB 72.7356% -42 - C2 -1GAD 7.8 G3P1_ECOLI
124 HHSearch 72.6258% -58 - C2 -2EP7 9.4 G3P_AQUAE
63 PsiBlast_CBE 72.1755% -43 - C2 -1GAE 7.6 G3P1_ECOLI
55 PsiBlast_CBE 72.1756% -60 - C2 -2EP7 9.6 G3P_AQUAE
122 HHSearch 72.0553% -47 - C2 -4LSM 8.9 ?
60 PsiBlast_CBE 71.2256% -41 - C2 -1GAD 8.7 G3P1_ECOLI
15 PsiBlast_PDB 71.1356% -36 - C2 -1S7C 2.3 G3P1_ECOLI
62 PsiBlast_CBE 70.6555% -41 - C2 -1GAE 8.2 G3P1_ECOLI
87 PsiBlast_CBE 70.6454% -38 - C2 -4P8R 8.6 ?
86 PsiBlast_CBE 70.5754% -39 - C2 -4P8R 8.4 ?
88 PsiBlast_CBE 70.5454% -41 - C2 -4P8R 8.4 ?
20 PsiBlast_PDB 70.4456% -39 - C2 -1DC6 8.6 G3P1_ECOLI
121 HHSearch 64.8955% 16 * C2 *3PYM 8.6 G3P3_YEAST
120 HHSearch 64.8754% -4 - C2 -3CPS 9.1 ?
118 HHSearch 64.6762% 18 - C2 -1HDG 9.7 G3P_THEMA
54 PsiBlast_CBE 64.1461% 13 - C2 -1HDG 9.9 G3P_THEMA
113 HHSearch 64.0458% 16 - C2 -1RM4 8.4 G3PA_SPIOL
99 PsiBlast_CBE 64.0054% -5 - C2 -3CPS 8.7 ?
12 PsiBlast_PDB 63.4061% 19 - C2 -1HDG 9.7 G3P_THEMA
129 HHSearch 62.7749% 4 - C2 -3H9E 9.0 G3PT_HUMAN
126 HHSearch 61.6454% 17 - C2 -4BOY 8.6 ?
98 PsiBlast_CBE 61.4354% 8 - C2 -3CPS 8.4 ?