@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu34090: (2016-07-27 )
MMKEAVTVSNVTKHFQRKTAVNNISFSIEKGEIAAILGPNGAGKTTVVSMILGLLKPSEGEIKLFNRVPDDQQVREKIGVMLQEVSVMPGLKVDEILELFRSYYPNPLSMKELVSLTALTKEDLKTRAEKLSGGQKRRLSFALALAGNPELLILDEPTVGMDTSSRHRFWQTIHGLSDQGKTIIFSTHYLQEADDAAQRILFFTEGQLVADGSPMQIRSRIQKQSVSFTLHSSESLERLSCHPEVERVIHEHERTIIQTSNTDKVLALIFQENIHARDIRIEQATLDEAFRQLADGNREAM

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_3(4QC2)
?
[Raw transfer]




ADP_A_3(4YER)
?
[Raw transfer]




ACP_A_4(4AYT)
ABCBA_HUMAN
[Raw transfer]




ATP_C_3(1VCI)
?
[Raw transfer]




ADP_A_3(4YER)
?
[Raw transfer]




ADP_A_3(4P32)
LPTB_ECOLI
[Raw transfer]




ACP_A_4(4AYX)
ABCBA_HUMAN
[Raw transfer]




ANP_A_2(4AYW)
ABCBA_HUMAN
[Raw transfer]




GOL_B_11(4P33)
LPTB_ECOLI
[Raw transfer]




IPA_A_6(3TIF)
Y796_METJA
[Raw transfer]




2 PsiBlast_PDB 79.9532% -7 - C1 -4YER 6.9 ?
1 PsiBlast_PDB 75.8633% -22 - C1 -1VPL - ? -
4 PsiBlast_PDB 71.8329% -47 - C1 -4YMT - ? -
5 PsiBlast_PDB 70.7529% -44 - C1 -4YMU - ? -
6 PsiBlast_PDB 70.5729% -45 - C1 -4YMV - ? -
7 PsiBlast_PDB 70.3929% -47 - C1 -4YMW - ? -
3 PsiBlast_PDB 70.0129% -48 - C1 -4YMS - ? -
8 PsiBlast_PDB 68.3831% -67 - C1 -2YYZ - ? -
60 HHSearch 65.9431% -24 - C1 -2YYZ - ? -
38 PsiBlast_CBE 64.5931% -2 - C1 -3FVQ - FBPC_NEIG1 -
37 PsiBlast_CBE 63.6731% -3 - C1 -3FVQ - FBPC_NEIG1 -
14 PsiBlast_PDB 63.1427% 45 - C1 -4HLU - ECFA2_THEMA -
20 PsiBlast_PDB 62.8532% -25 - C1 -1V43 - ? -
19 PsiBlast_PDB 62.7632% -25 - C1 -1VCI 4.4 ?
61 HHSearch 62.5926% -33 - C1 -3RLF - MALK_ECOLI -
73 HHSearch 62.5024% -44 - C1 -4RVC - ? -
58 HHSearch 61.4232% -24 - C1 -1V43 - ? -
57 HHSearch 61.2830% -23 - C1 -2IT1 - ? -
54 HHSearch 60.9328% -31 * C1 *4TQU - ? -
15 PsiBlast_PDB 60.5827% 42 - C1 -4ZIR - ECFA2_THEMA -
21 PsiBlast_CBE 54.3031% 41 - C1 -3TIF 3.1 Y796_METJA
53 HHSearch 50.8030% 27 - C1 -4YER 4.9 ?
44 PsiBlast_CBE 40.1731% 2 - C1 -4AYW 3.3 ABCBA_HUMAN
45 PsiBlast_CBE 38.3031% 11 - C1 -4AYX 3.2 ABCBA_HUMAN
46 PsiBlast_CBE 37.3931% 13 - C1 -4AYT 3.4 ABCBA_HUMAN