@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu34230: (2016-07-27 )
MHKKIYLSPPHMSGREQHYISEAFRSNWIAPLGPLVNSFEEQLAERVGVKAAAAVGSGTAAIHLALRLLEVKEGDSVFCQSFTFVATANPILYEKAVPVFIDSEPDTWNMSPTALERALEEAKRNGTLPKAVIAVNLYGQSAKMDEIVSLCDAYGVPVIEDAAESLGTVYKGKQSGTFGRFGIFSFNGNKIITTSGGGMLVSNDEAAIEKARFLASQAREPAVHYQHSEIGHNYRLSNILAGVGIAQLEVLDERVEKRRTIFTRYKNALGHLDGVRFMPEYAAGVSNRWLTTLTLDNGLSPYDIVQRLAEENIEARPLWKPLHTQPLFDPALFYSHEDTGSVCEDLFKRGICLPSGSNMTEDEQGRVIEVLLHLFHTVEVKKWTASIR

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

4RA_A_2(4ZTC)
PGLE_CAMJE
[Raw transfer]




ULP_A_2(3NYT)
WBPE_PSEAE
[Raw transfer]




TQP_B_4(3FRK)
?
[Raw transfer]




TQP_A_3(3FRK)
?
[Raw transfer]




UD0_B_6(3NUB)
WBPE_PSEAE
[Raw transfer]




PLP_H_8(1O61)
?
[Raw transfer]




PLP_A_2(3NYS)
WBPE_PSEAE
[Raw transfer]




PMP_A_4(3NU7)
WBPE_PSEAE
[Raw transfer]




PMP_B_6(3NU7)
WBPE_PSEAE
[Raw transfer]




PLP_B_7(4QGR)
?
[Raw transfer]




PLP_I_9(1O61)
?
[Raw transfer]




PLP_A_5(4QGR)
?
[Raw transfer]




X04_C_3(1O69)
?
[Raw transfer]




PLP_A_3(1MDZ)
ARNB_SALTY
[Raw transfer]




X04_A_4(1O69)
?
[Raw transfer]




X04_A_4(1O69)
?
[Raw transfer]




X04_A_4(1O69)
?
[Raw transfer]




PLP_A_2(1MDX)
ARNB_SALTY
[Raw transfer]




BME_B_11(1O62)
?
[Raw transfer]




39 Fugue 92.4447% -79 - C1 -1O69 3.3 ?
4 PsiBlast_PDB 91.8745% -72 - C1 -4ZTC 9.2 PGLE_CAMJE
49 HHSearch 91.8447% -76 - C1 -1O69 3.3 ?
3 PsiBlast_PDB 89.6945% -75 - C1 -1O69 3.3 ?
23 PsiBlast_CBE 88.3845% -72 - C1 -1O61 4.1 ?
1 PsiBlast_PDB 88.2745% -69 - C1 -1O61 4.1 ?
21 PsiBlast_CBE 87.6445% -71 - C1 -1O69 4.0 ?
22 PsiBlast_CBE 87.5845% -69 - C1 -1O62 2.5 ?
2 PsiBlast_PDB 87.4445% -68 - C1 -1O62 - ? -
55 HHSearch 85.5636% -91 - C1 -3DR4 - GDPPS_CAUCR -
25 PsiBlast_CBE 84.5435% -86 - C1 -3DR4 - GDPPS_CAUCR -
26 PsiBlast_CBE 84.4935% -85 - C1 -3DR4 - GDPPS_CAUCR -
24 PsiBlast_CBE 84.4835% -83 - C1 -3DR4 - GDPPS_CAUCR -
5 PsiBlast_PDB 83.7535% -83 - C1 -3DR4 - GDPPS_CAUCR -
63 HHSearch 81.9030% -80 - C1 -1MDO - ARNB_SALTY -
10 PsiBlast_PDB 76.2930% -59 - C1 -4ZAH - WECE_ECOLI -
64 HHSearch 76.0628% -55 - C1 -4LC3 - ? -
58 HHSearch 75.4729% -63 - C1 -4ZAH - WECE_ECOLI -
6 PsiBlast_PDB 72.8933% -34 - C1 -4QGR 3.8 ?
60 HHSearch 72.2429% -36 - C1 -4QGR - ? -
27 PsiBlast_CBE 71.8833% -33 - C1 -4QGR 4.0 ?
18 PsiBlast_PDB 69.7533%-104 - C1 -1MDZ 2.9 ARNB_SALTY
17 PsiBlast_PDB 66.7233% -96 - C1 -1MDX 3.0 ARNB_SALTY
30 PsiBlast_CBE 62.3833% -81 - C1 -3NU7 4.5 WBPE_PSEAE
7 PsiBlast_PDB 62.1136% -75 - C1 -3FRK 6.7 ?
14 PsiBlast_PDB 61.5333% -86 - C1 -3NYT 1.6 WBPE_PSEAE
13 PsiBlast_PDB 61.3133% -83 - C1 -3NYS 4.8 WBPE_PSEAE
8 PsiBlast_PDB 61.2533% -85 - C1 -3NU7 4.2 WBPE_PSEAE
28 PsiBlast_CBE 61.2436% -74 - C1 -3FRK 6.8 ?
29 PsiBlast_CBE 60.7733% -82 - C1 -3NUB 4.9 WBPE_PSEAE