@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu34390: (2016-07-28 )
MTHQIVTTQYGKVKGTTENGVHKWKGIPYAKPPVGQWRFKAPEPPEVWEDVLDATAYGSICPQPSDLLSLSYTELPRQSEDCLYVNVFAPDTPSKNLPVMVWIHGGAFYLGAGSEPLYDGSKLAAQGEVIVVTLNYRLGPFGFLHLSSFNEAYSDNLGLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGASRTMTKEQAASTSAAFLQVLGINEGQLDKLHTVSAEDLLKAADQLRIAEKENIFQLFFQPALDPKTLPEEPEKAIAEGAASGIPLLIGTTRDEGYLFFTPDSDVHSQETLDAALEYLLGKPLAEKVADLYPRSLESQIHMMTDLLFWRPAVAYASAQSHYAPVWMYRFDWHPKKPPYNKAFHALELPFVFGNLDGLERMAKAEITDEVKQLSHTIQSAWITFAKTGNPSTEAVNWPAYHEETRETLILDSEITIENDPESEKRQKLFPSKGE

Atome Classification :

(33 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GD8_A_4(2WFZ)
ACES_TORCA
[Raw transfer]




GD8_A_4(2WG2)
ACES_TORCA
[Raw transfer]




VX_A_4(1VXR)
ACES_TORCA
[Raw transfer]




GNT_B_9(4EY6)
ACES_HUMAN
[Raw transfer]




GNT_A_4(4EY6)
ACES_HUMAN
[Raw transfer]




GB_A_6(2WG0)
ACES_TORCA
[Raw transfer]




GB_A_4(1CFJ)
ACES_TORCA
[Raw transfer]




GB_A_4(2WG1)
ACES_TORCA
[Raw transfer]




ACE_A_8(2C4H)
ACES_TORCA
[Raw transfer]




VXA_A_4(1VXO)
ACES_TORCA
[Raw transfer]




HUP_B_10(4EY5)
ACES_HUMAN
[Raw transfer]




HUP_A_4(4EY5)
ACES_HUMAN
[Raw transfer]




EMM_A_5(1GQR)
ACES_TORCA
[Raw transfer]




PEG_A_4(5E2I)
?
[Raw transfer]




AT3_A_6(2C4H)
ACES_TORCA
[Raw transfer]




PEG_A_15(2WG0)
ACES_TORCA
[Raw transfer]




3 PsiBlast_PDB 98.4495% -90 - C1 -1C7I - PNBA_BACSU -
2 PsiBlast_PDB 98.0096% -90 - C1 -1C7J - PNBA_BACSU -
1 PsiBlast_PDB 93.2897% -92 - C1 -1QE3 - PNBA_BACSU -
111 HHSearch 93.1797% -91 - C1 -1QE3 - PNBA_BACSU -
4 PsiBlast_PDB 59.9040% -22 - C1 -2OGT - ? -
113 HHSearch 55.6941% -21 - C1 -2OGT - ? -
5 PsiBlast_PDB 54.0932% 0 - C- -2WQZ - NLGNX_HUMAN -
125 HHSearch 52.7832% -1 - C1 -5A2G - ? -
31 PsiBlast_CBE 52.6233% 9 - C1 -5A2G - ? -
6 PsiBlast_PDB 52.4632% 0 - C- -2XB6 - NLGNX_HUMAN -
21 PsiBlast_CBE 52.3532% 0 - C- -3BE8 - NLGNX_HUMAN -
32 PsiBlast_CBE 52.0533% 9 - C1 -5A2G - ? -
20 PsiBlast_PDB 51.9733% 9 - C1 -5A2G - ? -
33 PsiBlast_CBE 51.8833% 9 - C1 -5A2G - ? -
22 PsiBlast_CBE 51.6232% 0 - C- -2XB6 - NLGNX_HUMAN -
101 Fugue 50.2032% -10 - C1 -1MAH - ACES_MOUSE -
11 PsiBlast_PDB 50.0633% 3 - C1 -4BDT - ACES_HUMAN -
27 PsiBlast_CBE 49.8133% 1 - C1 -4EY7 - ACES_HUMAN -
19 PsiBlast_PDB 49.6733% 1 - C1 -1F8U - ACES_HUMAN -
13 PsiBlast_PDB 49.6633% 2 - C1 -4EY5 3.3 ACES_HUMAN
28 PsiBlast_CBE 49.3133% 3 - C1 -4EY6 4.4 ACES_HUMAN
14 PsiBlast_PDB 49.2933% 3 - C1 -4EY6 4.3 ACES_HUMAN
29 PsiBlast_CBE 49.2733% 0 - C1 -4EY5 3.4 ACES_HUMAN
76 PsiBlast_CBE 42.8731% 28 - C1 -1CFJ 3.1 ACES_TORCA
88 PsiBlast_CBE 42.6331% 29 - C1 -1GQR 1.4 ACES_TORCA
40 PsiBlast_CBE 42.5931% 29 - C1 -2WG0 3.2 ACES_TORCA
67 PsiBlast_CBE 42.3431% 28 - C1 -1VXR 3.5 ACES_TORCA
41 PsiBlast_CBE 42.2231% 28 - C1 -2WFZ 3.0 ACES_TORCA
85 PsiBlast_CBE 42.1931% 30 - C1 -5E2I 3.0 ?
64 PsiBlast_CBE 42.1831% 30 - C1 -2C4H 2.8 ACES_TORCA
38 PsiBlast_CBE 42.1431% 28 - C1 -2WG2 2.9 ACES_TORCA
39 PsiBlast_CBE 42.0931% 29 - C1 -2WG1 3.3 ACES_TORCA
68 PsiBlast_CBE 42.0031% 29 - C1 -1VXO 3.2 ACES_TORCA