@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu34400: (2016-07-28 )
MENFIGSHMIYTYENGWEYEIYIKNDHTIDYRIHSGMVAGRWVRDQEVNIVKLTEGVYKVSWTEPTGTDVSLNFMPNEKRMHGIIFFPKWVHEHPEITVCYQNDHIDLMKESREKYETYPKYVVPEFAEITFLKNEGVDNEEVISKAPYEGMTDDIRAGRL

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

HC4_A_4(4ALB)
PADC_BACSU
[Raw transfer]




HC4_B_5(4ALB)
PADC_BACSU
[Raw transfer]




HC4_C_6(4ALB)
PADC_BACSU
[Raw transfer]




IPA_A_6(2WSJ)
?
[Raw transfer]




EDO_A_6(2P8G)
PADC_BACSU
[Raw transfer]




IPA_B_6(2W2B)
?
[Raw transfer]




IPA_A_4(2W2B)
?
[Raw transfer]




IPA_B_9(2WSJ)
?
[Raw transfer]




IPA_A_4(2WSJ)
?
[Raw transfer]




FER_A_3(3NX2)
?
[Raw transfer]




EDO_A_8(2P8G)
PADC_BACSU
[Raw transfer]




2 PsiBlast_PDB 91.2395% -87 - C3 -2P8G 2.5 PADC_BACSU
26 HHSearch 91.2099% -86 - C3 -2P8G 2.8 PADC_BACSU
20 PsiBlast_CBE 89.4499% -83 - C3 -4ALB 3.7 PADC_BACSU
1 PsiBlast_PDB 89.0099% -82 - C3 -4ALB 4.0 PADC_BACSU
3 PsiBlast_PDB 88.7685% -89 - C3 -3NAD - ? -
19 PsiBlast_CBE 87.5299% -80 - C3 -4ALB 4.0 PADC_BACSU
21 PsiBlast_CBE 83.5070% -84 - C3 -2W2B 3.2 ?
7 PsiBlast_PDB 83.1470% -84 - C3 -2WSJ 2.8 ?
24 PsiBlast_CBE 82.9470% -86 - C3 -2WSJ 2.2 ?
28 HHSearch 82.8671% -86 - C3 -2W2A - ? -
4 PsiBlast_PDB 82.8671% -86 - C3 -2W2A - ? -
8 PsiBlast_PDB 82.3768% -85 - C3 -2GC9 - ? -
22 PsiBlast_CBE 82.1270% -88 - C3 -2W2F - ? -
5 PsiBlast_PDB 82.0370% -84 - C3 -2W2B 3.2 ?
6 PsiBlast_PDB 81.7370% -79 - C3 -2W2F - ? -
23 PsiBlast_CBE 80.5270% -83 - C3 -2W2F - ? -
9 PsiBlast_PDB 79.3458% -99 - C3 -3NX1 - ? -
12 PsiBlast_PDB 79.2855%-101 - C3 -4UU2 - ? -
25 PsiBlast_CBE 78.3955% -98 - C3 -4UU2 - ? -
11 PsiBlast_PDB 78.0556% -93 - C3 -4UU3 - ? -
10 PsiBlast_PDB 78.0058% -93 - C3 -3NX2 2.4 ?