@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu34620: (2016-07-28 )
MEYAAIHHQPFSTDAYSYDGRTVHIKIRTKKGDADHIRFIWGDPYEYNDGKWSANEQPMRKIAATEMHDYWFAEVVPPFRRLQYAFVVTDDHEDIFFGSSGVCPYNEKTLETIHYYFKFPFVHEADTFQAPEWVKSTVWYQIFPERFANGREDLSPKNALPWGSKDPGVNDFFGGDLQGIVDKLDYLEDLGVNGIYLTPIFSAPSNHKYDTLDYFSIDPHFGDPEIFRTLVSQLHQRGMRIMLDAVFNHIGSASPQWQDVVKNGDQSRYKDWFHIHSFPVTDDNYDRFAFTADMPKLNTANPEVQKYLLDIALYWIREFDIDGWRLDVANEVDHVFWKTFRQAVSTEKPDVYILGEIWHSAEPWLRGDEFHAAMNYPFTEPMIEYFADQTISASRMAHRVNAHLMNGMKQANEVMFNLLDSHDTKRLLTRCRNDEKKARALLAFMFAQTGSPCIYYGTEIGLDGENDPLCRKCMVWEKEKQNQDMLQFMKRLIALRKQENTLLTEGHLEWNLLDDKNDFISFSRTLDEKILIYFFNQGNVVQHISLRELNIDRNNKICDAWTEQPLHYHDVIAVQPGEFLILSAAAPV

Atome Classification :

(35 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MTT_D_4(1JIB)
NEPU2_THEVU
[Raw transfer]




ARE_B_6(3A6O)
NEPU2_THEVU
[Raw transfer]




ARE_A_4(3A6O)
NEPU2_THEVU
[Raw transfer]




MTT_C_3(1JIB)
NEPU2_THEVU
[Raw transfer]




BCD_A_3(1GVI)
?
[Raw transfer]




SUGAR_D_4(1J0J)
NEPU_GEOSE
[Raw transfer]

-

SUGAR_D_4(1J0I)
NEPU_GEOSE
[Raw transfer]

-

BCD_B_4(1GVI)
?
[Raw transfer]




SUGAR_D_4(1J0K)
NEPU_GEOSE
[Raw transfer]

-

SUGAR_B_4(2D2O)
NEPU2_THEVU
[Raw transfer]

-

SUGAR_C_3(1J0I)
NEPU_GEOSE
[Raw transfer]

-

SUGAR_A_3(2D2O)
NEPU2_THEVU
[Raw transfer]

-

BCD_C_3(1JL8)
NEPU2_THEVU
[Raw transfer]




SUGAR_A_3(1VFM)
NEPU2_THEVU
[Raw transfer]

-

SUGAR_C_3(1J0K)
NEPU_GEOSE
[Raw transfer]

-

SUGAR_B_4(1VB9)
NEPU2_THEVU
[Raw transfer]

-

GOL_A_5(3VGB)
TREZ_SULSF
[Raw transfer]




SUGAR_B_4(1VFO)
NEPU2_THEVU
[Raw transfer]

-

SUGAR_A_3(1VFO)
NEPU2_THEVU
[Raw transfer]

-

BCD_C_3(1G1Y)
NEPU2_THEVU
[Raw transfer]




SUGAR_A_3(1VFU)
NEPU2_THEVU
[Raw transfer]

-

BCD_D_4(1G1Y)
NEPU2_THEVU
[Raw transfer]




BCD_D_4(1JL8)
NEPU2_THEVU
[Raw transfer]




SUGAR_A_3(1VB9)
NEPU2_THEVU
[Raw transfer]

-

SUGAR_B_4(1VFU)
NEPU2_THEVU
[Raw transfer]

-

SUGAR_B_4(1VFM)
NEPU2_THEVU
[Raw transfer]

-

25 PsiBlast_CBE 90.2954% -53 - C1 -1J0J 5.7 NEPU_GEOSE
61 HHSearch 89.6351% -48 - C1 -1J0H - NEPU_GEOSE -
3 PsiBlast_PDB 88.8854% -53 - C1 -1J0H - NEPU_GEOSE -
24 PsiBlast_CBE 87.9154% -51 - C1 -1J0K 4.9 NEPU_GEOSE
6 PsiBlast_PDB 87.3254% -55 - C1 -1J0K 4.4 NEPU_GEOSE
4 PsiBlast_PDB 87.2554% -51 - C1 -1J0I 3.4 NEPU_GEOSE
5 PsiBlast_PDB 86.9554% -53 - C1 -1J0J - NEPU_GEOSE -
22 PsiBlast_CBE 86.6854% -50 - C1 -1J0I 4.1 NEPU_GEOSE
23 PsiBlast_CBE 84.9254% -48 - C1 -1J0H - NEPU_GEOSE -
21 PsiBlast_CBE 84.7455% -53 - C1 -1GVI 5.4 ?
2 PsiBlast_PDB 84.6855% -52 - C1 -1GVI 5.8 ?
1 PsiBlast_PDB 81.5456% -50 - C1 -1SMA - ? -
50 Fugue 75.8052% 8 * C1 *1SMA - ? -
10 PsiBlast_PDB 75.0342% -3 - C1 -3A6O 4.9 NEPU2_THEVU
8 PsiBlast_PDB 74.9042% -4 - C1 -1BVZ - NEPU2_THEVU -
18 PsiBlast_PDB 74.8442% -5 - C1 -1G1Y 3.4 NEPU2_THEVU
60 HHSearch 74.6645% -39 - C1 -1EA9 - ? -
30 PsiBlast_CBE 74.5842% -3 - C1 -2D2O 5.2 NEPU2_THEVU
27 PsiBlast_CBE 74.0542% -3 - C1 -1JI2 - NEPU2_THEVU -
33 PsiBlast_CBE 73.6442% -3 - C1 -1JL8 3.9 NEPU2_THEVU
15 PsiBlast_PDB 73.0642% -2 - C1 -1VB9 6.0 NEPU2_THEVU
13 PsiBlast_PDB 72.9542% -6 - C1 -1JL8 4.5 NEPU2_THEVU
32 PsiBlast_CBE 72.7942% -4 - C1 -1VB9 5.4 NEPU2_THEVU
40 PsiBlast_CBE 72.5342% -6 - C1 -1VFO 5.1 NEPU2_THEVU
34 PsiBlast_CBE 72.0742% -5 - C1 -1JIB 4.6 NEPU2_THEVU
14 PsiBlast_PDB 72.0642% -3 - C1 -1JIB 3.6 NEPU2_THEVU
39 PsiBlast_CBE 72.0442% -4 - C1 -1VFU 4.5 NEPU2_THEVU
16 PsiBlast_PDB 71.9742% -3 - C1 -2D2O 5.6 NEPU2_THEVU
38 PsiBlast_CBE 71.7942% -2 - C1 -1VFU 3.6 NEPU2_THEVU
41 PsiBlast_CBE 71.5842% -3 - C1 -1VFO 5.9 NEPU2_THEVU
43 PsiBlast_CBE 71.1042% -2 - C1 -1VFM 5.3 NEPU2_THEVU
42 PsiBlast_CBE 70.3442% -5 - C1 -1VFM 4.0 NEPU2_THEVU
26 PsiBlast_CBE 69.5442% -5 - C1 -3A6O 6.1 NEPU2_THEVU
35 PsiBlast_CBE 67.9742% -3 - C1 -1G1Y 3.7 NEPU2_THEVU
47 PsiBlast_CBE 26.4933% -22 - C1 -3VGB 2.5 TREZ_SULSF