@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu34680: (2016-07-28 )
MLKPFVFITKPIPEEIEAFIGEHCRYEVWQEDTLPSDVLFEKLKEAEGLLTSGTSGPSINRELLEHAPKLKVVSNQSVGYDNFDIEAMKERGVVGTHTPYTLDDTVADLAFSLILSSARRVAELDRFVRAGKWGTVEEEALFGIDVHHQTLGIIGMGRIGEQAARRAKFGFDMEVLYHNRHRKQETEDSIGVKYAELDTLLEQSDFILLITPLTDETYHMIGEREFKLMKNSAIFVNISRGKTVDEKALIRALQEGWIRGAGLDVYEKEPVTQDNPLLQLDNVTLLPHIGSATAKVRFNMCKQAAENMLAAIQGQTPKNLTREFQ

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAP_A_4(2DBQ)
GYAR_PYRHO
[Raw transfer]




NAP_A_7(2DBZ)
GYAR_PYRHO
[Raw transfer]




NAP_B_8(2DBZ)
GYAR_PYRHO
[Raw transfer]




NDP_J_10(2GCG)
GRHPR_HUMAN
[Raw transfer]




NAP_A_2(5AOV)
?
[Raw transfer]




NDP_K_11(2GCG)
GRHPR_HUMAN
[Raw transfer]




NAP_A_2(5AOV)
?
[Raw transfer]




NDP_J_10(2GCG)
GRHPR_HUMAN
[Raw transfer]




NDP_L_12(2GCG)
GRHPR_HUMAN
[Raw transfer]




NAD_C_3(1WWK)
?
[Raw transfer]




GOL_A_5(2DBQ)
GYAR_PYRHO
[Raw transfer]




GOL_A_17(3JTM)
FDH_ARATH
[Raw transfer]




NHE_E_5(2CUK)
?
[Raw transfer]




GLV_A_3(5AOV)
?
[Raw transfer]




GLV_A_23(5AOV)
?
[Raw transfer]




105 Fugue 83.2431%-120 - C1 -1YGY - SERA_MYCTU -
5 PsiBlast_PDB 81.1246% 9 - C1 -2DBQ 9.0 GYAR_PYRHO
24 PsiBlast_CBE 81.0647% 4 - C1 -2DBR - GYAR_PYRHO -
25 PsiBlast_CBE 79.4747% 9 - C1 -2DBR - GYAR_PYRHO -
23 PsiBlast_CBE 79.4647% 11 - C1 -2DBR - GYAR_PYRHO -
3 PsiBlast_PDB 79.2347% 6 - C1 -2DBR - GYAR_PYRHO -
4 PsiBlast_PDB 79.1747% 6 - C1 -2DBZ 10.5 GYAR_PYRHO
27 PsiBlast_CBE 78.8847% 7 - C1 -2DBR - GYAR_PYRHO -
26 PsiBlast_CBE 78.8347% 10 - C1 -2DBR - GYAR_PYRHO -
6 PsiBlast_PDB 78.7641%-114 - C1 -1WWK - ? -
124 HHSearch 78.7048% 5 * C1 *5AOV 10.5 ?
1 PsiBlast_PDB 77.8746% 12 - C1 -5AOV 10.4 ?
64 PsiBlast_CBE 77.8531%-111 - C1 -2G76 - SERA_HUMAN -
22 PsiBlast_CBE 77.7747% 6 - C1 -2DBZ 10.0 GYAR_PYRHO
28 PsiBlast_CBE 77.1841%-115 - C1 -1WWK - ? -
2 PsiBlast_PDB 76.5347% 14 - C1 -5AOW - ? -
8 PsiBlast_PDB 76.3438% -15 - C1 -2WWR - GRHPR_HUMAN -
63 PsiBlast_CBE 76.1731%-112 - C1 -2G76 - SERA_HUMAN -
34 PsiBlast_CBE 75.7832% -25 - C1 -4E5P - PTXD_PSEST -
21 PsiBlast_CBE 75.3447% 16 - C1 -5AOW - ? -
33 PsiBlast_CBE 73.3838% -11 - C1 -2GCG 6.0 GRHPR_HUMAN
7 PsiBlast_PDB 72.9838% -10 - C1 -2GCG 5.6 GRHPR_HUMAN
32 PsiBlast_CBE 72.7338% -7 - C1 -2GCG 6.3 GRHPR_HUMAN
132 HHSearch 72.5339% -15 - C1 -1WWK 10.0 ?
130 HHSearch 70.7137% -2 - C1 -2GCG 8.3 GRHPR_HUMAN
50 PsiBlast_CBE 69.9438% -22 - C1 -2CUK 3.4 ?