@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu34920: (2016-07-29 )
MGKLLTMAMPKGRIFEEAAGLLRQAGYRLPEEFEDSRKLIIDVPEENLRFILAKPMDVTTYVEHGVADVGIAGKDVMLEEERDVYEVLDLNISKCHLAVAGLPNTDWSGVAPRIATKYPNVASSYFREQGEQVEIIKLNGSIELAPLIGLADRIVDIVSTGQTLKENGLVETEHICDITSRFIVNPVSYRMKDDVIDEMASRLSLVVEGETAK

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AMP_A_7(1H3D)
HIS1_ECOLI
[Raw transfer]




AMP_A_7(1H3D)
HIS1_ECOLI
[Raw transfer]




GOL_C_3(1VE4)
HIS1_THET2
[Raw transfer]




1 PsiBlast_PDB 96.66100%-124 - C5 -2VD2 - HIS1_BACSU -
42 HHSearch 86.1499% -11 - C5 -2VD2 - HIS1_BACSU -
44 HHSearch 75.4139%-147 - C5 -1VE4 2.7 HIS1_THET2
3 PsiBlast_PDB 74.6040%-157 - C5 -1VE4 - HIS1_THET2 -
30 PsiBlast_CBE 71.2137%-130 - C5 -1USY - HIS1_THEMA -
5 PsiBlast_PDB 70.9237%-139 - C5 -1USY - HIS1_THEMA -
28 PsiBlast_CBE 70.9137%-129 - C5 -1USY - HIS1_THEMA -
4 PsiBlast_PDB 70.6937%-117 - C5 -1O64 - HIS1_THEMA -
29 PsiBlast_CBE 70.5637%-123 - C5 -1USY - HIS1_THEMA -
27 PsiBlast_CBE 69.8237%-123 - C5 -1O64 - HIS1_THEMA -
2 PsiBlast_PDB 69.5544% -49 - C5 -1Z7N - HIS1_LACLA -
21 PsiBlast_CBE 68.9244% -48 - C5 -1Z7N - HIS1_LACLA -
45 HHSearch 68.5638%-121 - C- -1O63 - HIS1_THEMA -
23 PsiBlast_CBE 68.4644% -42 - C5 -1Z7N - HIS1_LACLA -
22 PsiBlast_CBE 68.3244% -45 - C5 -1Z7N - HIS1_LACLA -
26 PsiBlast_CBE 67.8744% -42 - C5 -1Z7M - HIS1_LACLA -
24 PsiBlast_CBE 65.6344% -42 - C5 -1Z7M - HIS1_LACLA -
25 PsiBlast_CBE 64.9944% -36 - C5 -1Z7M - HIS1_LACLA -
49 HHSearch 60.5934% 27 - C5 -2VD3 - HIS1_METTH -
9 PsiBlast_PDB 60.5731% 6 - C5 -1NH8 - HIS1_MYCTU -
47 HHSearch 56.6231% 30 - C5 -1H3D 5.1 HIS1_ECOLI
10 PsiBlast_PDB 56.2530% 39 - C5 -1H3D 5.1 HIS1_ECOLI