@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu35010: (2016-07-29 )
MAESLLIKDIAIVTENEVIKNGYVGINDGKISTVSTERPKEPYSKEIQAPADSVLLPGMIDIHIHGGYGADTMDASFSTLDIMSSRLPEEGTTSFLATTITQEHGNISQALVNAREWKAAEESSLLGAELLGIHLEGPFVSPKRAGAQPKEWIRPSDVELFKKWQQEAGGLIKIVTLAPEEDQHFELIRHLKDESIIASMGHTDADSALLSDAAKAGASHMTHLYNAMSPFHHREPGVIGTALAHDGFVTELIADGIHSHPLAAKLAFLAKGSSKLILITDSMRAKGLKDGVYEFGGQSVTVRGRTALLSDGTLAGSILKMNEGARHMREFTNCSWTDIANITSENAAKQLGIFDRKGSVTVGKDADLVIVSSDCEVILTICRGNIAFISKEADQI

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GLP_A_3(2VHL)
NAGA_BACSU
[Raw transfer]



GLP_B_7(2VHL)
NAGA_BACSU
[Raw transfer]



GLP_A_3(2VHL)
NAGA_BACSU
[Raw transfer]



NNG_A_5(2P53)
NAGA_ECOLI
[Raw transfer]



NNG_B_6(2P53)
NAGA_ECOLI
[Raw transfer]
21 PsiBlast_CBE 94.68100% -76 - C1 -2VHL 4.6 NAGA_BACSU
1 PsiBlast_PDB 93.99100% -75 * C1 *2VHL 4.2 NAGA_BACSU
82 HHSearch 80.9289% -1 - C1 -2VHL 4.2 NAGA_BACSU
2 PsiBlast_PDB 67.5036% -19 - C1 -1O12 - ? -
84 HHSearch 67.4031% -28 - C1 -3IV8 - NAGA_VIBCH -
3 PsiBlast_PDB 66.6431% 6 - C1 -3EGJ - NAGA_VIBCH -
83 HHSearch 66.3530% -25 - C1 -1YRR - NAGA_ECOLI -
24 PsiBlast_CBE 65.7431% 7 - C1 -3IV8 - NAGA_VIBCH -
23 PsiBlast_CBE 65.6531% 6 - C1 -3IV8 - NAGA_VIBCH -
86 HHSearch 65.5335% -5 - C1 -1O12 - ? -
4 PsiBlast_PDB 65.5231% 9 - C1 -3IV8 - NAGA_VIBCH -
29 PsiBlast_CBE 64.8531% 12 - C1 -2P53 3.5 NAGA_ECOLI
6 PsiBlast_PDB 64.6231% 14 - C1 -1YRR - NAGA_ECOLI -
25 PsiBlast_CBE 64.2731% 5 - C1 -3EGJ - NAGA_VIBCH -
5 PsiBlast_PDB 64.2631% 10 - C1 -1YMY - NAGA_ECOLI -
8 PsiBlast_PDB 63.9331% 14 - C1 -2P53 3.4 NAGA_ECOLI
22 PsiBlast_CBE 63.4831% 1 - C1 -3IV8 - NAGA_VIBCH -
7 PsiBlast_PDB 62.8731% 14 - C1 -2P50 - NAGA_ECOLI -
27 PsiBlast_CBE 60.5131% 21 - C1 -2P50 - NAGA_ECOLI -
28 PsiBlast_CBE 59.7931% 19 - C1 -2P50 - NAGA_ECOLI -