@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu35060: (2016-07-29 )
MSQSIKLFSVLSDQFQNNPYAYFSQLREEDPVHYEESIDSYFISRYHDVRYILQHPDIFTTKSLVERAEPVMRGPVLAQMHGKEHSAKRRIVVRSFIGDALDHLSPLIKQNAENLLAPYLERGKSDLVNDFGKTFAVCVTMDMLGLDKRDHEKISEWHSGVADFITSISQSPEARAHSLWCSEQLSQYLMPVIKERRVNPGSDLISILCTSEYEGMALSDKDILALILNVLLAATEPADKTLALMIYHLLNNPEQMNDVLADRSLVPRAIAETLRYKPPVQLIPRQLSQDTVVGGMEIKKDTIVFCMIGAANRDPEAFEQPDVFNIHREDLGIKSAFSGAARHLAFGSGIHNCVGAAFAKNEIEIVANIVLDKMRNIRLEEDFCYAESGLYTRGPVSLLVAFDGA

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

HEM_A_3(3NC5)
CYPX_BACSU
[Raw transfer]




HEM_B_9(3NC3)
CYPX_BACSU
[Raw transfer]




HEM_A_3(3NC3)
CYPX_BACSU
[Raw transfer]




HEM_A_3(3NC3)
CYPX_BACSU
[Raw transfer]




GOL_A_4(3NC3)
CYPX_BACSU
[Raw transfer]




HEM_B_6(3NC7)
CYPX_BACSU
[Raw transfer]




HEM_B_4(3NC6)
CYPX_BACSU
[Raw transfer]




GOL_A_4(3NC5)
CYPX_BACSU
[Raw transfer]




1 PsiBlast_PDB 98.0099%-138 - C2 -3NC3 12.3 CYPX_BACSU
2 PsiBlast_PDB 97.9999%-141 - C2 -3NC5 12.2 CYPX_BACSU
40 HHSearch 97.9199%-134 - C2 -3NC3 12.3 CYPX_BACSU
23 PsiBlast_CBE 96.3599%-132 - C2 -3NC3 12.3 CYPX_BACSU
22 PsiBlast_CBE 95.8199%-131 - C2 -3NC6 11.3 CYPX_BACSU
21 PsiBlast_CBE 94.9599%-134 - C2 -3NC7 12.2 CYPX_BACSU
51 HHSearch 55.6325% -23 - C2 -2XKR - CP142_MYCTU -
37 HHSearch 54.2925% -14 - C2 -3BUJ - ? -
12 PsiBlast_PDB 52.8226% 1 - C2 -4YT3 - ? -
46 HHSearch 52.5526% 0 * C2 *4MM0 - ? -
16 PsiBlast_PDB 52.5427% -8 - C2 -2JJO - ERYK_SACEN -
18 PsiBlast_PDB 52.4927% -10 - C2 -2XFH - ERYK_SACEN -
14 PsiBlast_PDB 52.4627% -9 - C2 -2WIO - ERYK_SACEN -
20 PsiBlast_PDB 51.9426% 12 - C2 -3WVS - ? -
19 PsiBlast_PDB 51.8627% -4 - C2 -3ZKP - ERYK_SACEN -
10 PsiBlast_PDB 51.7128% 26 - C2 -2YCA - MYCG_MICGR -
43 HHSearch 51.6918% -24 - C2 -4C9L - ? -
47 HHSearch 51.6524% 12 - C2 -3IVY - CP125_MYCTU -
36 HHSearch 51.4924% -18 - C2 -4E2P - ? -
7 PsiBlast_PDB 51.4928% 26 - C2 -2Y5Z - MYCG_MICGR -