@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu35170: (2016-07-29 )
MKDRFELVSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRHSATSALFERRDVIIIASVSCIYGLGSPEEYREMVVSLRTEMEIERNELLRKLVDIQYARNDIDFQRGTFRVRGDVVEIFPASRDEHCVRVEFFGDEIERIREVDALTGEILGDRDHVAIFPASHFVTRAEKMEKAIQNIEKELEEQLKVMHENGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLTLRPPGSTPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYEIEHTDEMVEQIIRPTGLLDPLIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAEGRVIMYADKITKSMEIAINETKRRREQQERFNEEHGITPKTINKEIRDVIRATVAAEDKAEYKTKAAPKLSKMTKKERQKVVEQMEHEMKEAAKALDFERAAELRDLLLELKAEG

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FLQ_C_5(2FDC)
UVRB_BACCA
[Raw transfer]




NACID_C_1(2FDC)
UVRB_BACCA
[Raw transfer]

-

NACID_D_2(2FDC)
UVRB_BACCA
[Raw transfer]

-

NACID_D_1(2NMV)
?
[Raw transfer]

-

NACID_D_1(2D7D)
UVRB_BACSU
[Raw transfer]

-

NACID_D_1(2D7D)
UVRB_BACSU
[Raw transfer]

-

CHAIN_C_3(3V4R)
?
[Raw transfer]

-

CHAIN_D_4(3V4R)
UVRB_BACSU
[Raw transfer]

-

1 PsiBlast_PDB 80.46100% -91 - C5 -2D7D 8.8 UVRB_BACSU
2 PsiBlast_PDB 79.57100% -91 - C5 -2NMV 7.7 ?
21 PsiBlast_CBE 76.98100% -95 - C5 -3V4R 13.7 ?
3 PsiBlast_PDB 76.71100% -98 - C5 -3V4R 10.9 UVRB_BACSU
23 PsiBlast_CBE 75.5782% -97 - C5 -1T5L - UVRB_BACCA -
5 PsiBlast_PDB 75.0182% -96 - C5 -1T5L - UVRB_BACCA -
6 PsiBlast_PDB 73.7582% -91 - C5 -3UWX - ? -
22 PsiBlast_CBE 72.6182% -97 - C5 -2FDC 18.3 UVRB_BACCA
50 HHSearch 70.4899% 17 - C5 -2D7D 8.8 UVRB_BACSU
7 PsiBlast_PDB 68.8482% -78 - C5 -1D9Z - UVRB_BACCA -
79 Fugue 67.7084% -49 - C5 -1D9X - UVRB_BACCA -
78 Fugue 65.8160% -92 - C5 -1D2M - UVRB_THET8 -
4 PsiBlast_PDB 65.5882% -92 - C5 -2FDC 12.2 UVRB_BACCA
8 PsiBlast_PDB 65.3882% -33 - C5 -1D9X - UVRB_BACCA -
80 Fugue 42.3480% 17 - C5 -1D9X - UVRB_BACCA -
9 PsiBlast_PDB 36.9888%-173 * C6 *3FPN - ? -
81 Fugue 35.3717% -88 * C4 *3HJH - MFD_ECOLI -
57 HHSearch 34.1522%-140 * C5 *2V1X - RECQ1_HUMAN -
65 HHSearch 33.8624%-153 - C5 -4LJY - PRP5_YEAST -
70 HHSearch 32.9419%-175 - C5 -1XTI - DX39B_HUMAN -