@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu35240: (2016-07-29 )
MNQKIMAVIAAGSMLFGGAGVYAGINLLEMDKPQTAAVPATAQADSERDKAMDKIEKAYELISNEYVEKVDREKLLEGAIQGMLSTLNDPYSVYMDKQTAKQFSDSLDSSFEGIGAEVGMEDGKIIIVSPFKKSPAEKAGLKPNDEIISINGESMAGKDLNHAVLKIRGKKGSSVSMKIQRPGTKKQLSFRIKRAEIPLETVFASEKKVQGHSVGYIAISTFSEHTAEDFAKALRELEKKEIEGLVIDVRGNPGGYLQSVEEILKHFVTKDQPYIQIAERNGDKKRYFSTLTHKKAYPVNVITDKGSASASEILAGALKEAGHYDVVGDTSFGKGTVQQAVPMGDGSNIKLTLYKWLTPNGNWIHKKGIEPTIAIKQPDYFSAGPLQLKEPLKVDMNNEDVKHAQVLLKGLSFDPGREDGYFSKDMKKAVMAFQDQNKLNKTGVIDTRTAETLNQQIEKKKSDEKNDLQLQTALKSLFVN

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CHAIN_C_3(4C2F)
CTPB_BACSU
[Raw transfer]

-

CHAIN_O_11(4C2D)
CTPB_BACSU
[Raw transfer]

-

CHAIN_M_9(4C2D)
CTPB_BACSU
[Raw transfer]

-

CHAIN_C_3(4C2C)
CTPB_BACSU
[Raw transfer]

-

CHAIN_N_10(4C2D)
CTPB_BACSU
[Raw transfer]

-

CHAIN_C_3(4C2G)
CTPB_BACSU
[Raw transfer]

-

22 PsiBlast_CBE 80.66100% -61 - C2 -4C2D 5.0 CTPB_BACSU
23 PsiBlast_CBE 80.02100% -56 - C2 -4C2D 5.5 CTPB_BACSU
1 PsiBlast_PDB 79.96100% -54 * C2 *4C2D 6.3 CTPB_BACSU
4 PsiBlast_PDB 79.2099% -33 - C2 -4C2H - ? -
2 PsiBlast_PDB 79.1299% -46 - C2 -4C2G 7.4 CTPB_BACSU
67 Fugue 78.8199% -34 - C2 -4C2E - CTPB_BACSU -
3 PsiBlast_PDB 78.8199% -34 - C2 -4C2E - CTPB_BACSU -
5 PsiBlast_PDB 78.5997% -44 - C2 -4C2C 7.4 CTPB_BACSU
77 HHSearch 78.3899% -34 - C2 -4C2E - CTPB_BACSU -
6 PsiBlast_PDB 77.1897% -42 - C2 -4C2F 5.1 CTPB_BACSU
21 PsiBlast_CBE 67.83100% -51 - C2 -4C2D - CTPB_BACSU -
10 PsiBlast_PDB 42.4027% 27 - C2 -1FC6 - CTPA_ACUOB -
9 PsiBlast_PDB 42.1827% 33 - C2 -1FCF - CTPA_ACUOB -
7 PsiBlast_PDB 41.0027% 29 - C2 -1FC7 - CTPA_ACUOB -
8 PsiBlast_PDB 40.8327% 34 - C2 -1FC9 - CTPA_ACUOB -
78 HHSearch 40.7128% 50 - C2 -1FC6 - CTPA_ACUOB -
68 Fugue 37.5924% 67 - C2 -1FC6 - CTPA_ACUOB -
50 PsiBlast_CBE 36.8348%-155 - C2 -3R69 - -
51 PsiBlast_CBE 36.7448%-182 - C2 -3R69 - NHRF3_MOUSE (first) -
63 PsiBlast_CBE 36.3743%-126 - C2 -2HE4 - -