@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu35300: (2016-07-29 )
MLGILNKMFDPTKRTLNRYEKIANDIDAIRGDYENLSDDALKHKTIEFKERLEKGATTDDLLVEAFAVVREASRRVTGMFPFKVQLMGGVALHDGNIAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKGAVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMRRFGAERTMAMLDRFGMDDSTPIQSKMVSRAVESSQKRVEGNNFDSRKQLLQYDDVLRQQREVIYKQRFEVIDSENLREIVENMIKSSLERAIAAYTPREELPEEWKLDGLVDLINTTYLDEGALEKSDIFGKEPDEMLELIMDRIITKYNEKEEQFGKEQMREFEKVIVLRAVDSKWMDHIDAMDQLRQGIHLRAYAQTNPLREYQMEGFAMFEHMIESIEDEVAKFVMKAEIENNLEREEVVQGQTTAHQPQEGDDNKKAKKAPVRKVVDIGRNAPCHCGSGKKYKNCCGRTE

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_A_8(1M74)
SECA_BACSU
[Raw transfer]




ADP_A_3(1TF2)
SECA_BACSU
[Raw transfer]




ADP_A_2(4YS0)
SECA_THEMA
[Raw transfer]




ADP_A_3(3JUX)
SECA_THEMA
[Raw transfer]




ADP_A_2(4YS0)
SECA_THEMA
[Raw transfer]




1 PsiBlast_PDB 87.81100% -65 - C2 -1TF2 5.3 SECA_BACSU
2 PsiBlast_PDB 87.61100% -64 - C2 -1TF5 - SECA_BACSU -
6 PsiBlast_PDB 87.5599% -54 - C2 -3IQM - SECA_BACSU -
3 PsiBlast_PDB 87.4499% -54 - C2 -3IQY - SECA_BACSU -
5 PsiBlast_PDB 87.42100% -50 - C2 -1M74 5.8 SECA_BACSU
32 Fugue 87.41100% -55 - C2 -1M6N - SECA_BACSU -
4 PsiBlast_PDB 87.41100% -55 - C2 -1M6N - SECA_BACSU -
8 PsiBlast_PDB 87.16100% -59 - C2 -3JV2 - SECA_BACSU -
21 PsiBlast_CBE 86.82100% -61 - C2 -3JV2 - SECA_BACSU -
7 PsiBlast_PDB 83.61100% -40 - C2 -2IBM - SECA_BACSU -
10 PsiBlast_PDB 82.5594% -57 - C2 -5EUL - ? -
9 PsiBlast_PDB 79.85100% -32 - C2 -3DL8 - SECA_BACSU -
14 PsiBlast_PDB 69.1551% 6 - C2 -2VDA - SECA_ECOLI -
24 PsiBlast_CBE 68.9348% 33 - C2 -1NKT - SECA1_MYCTU -
33 Fugue 68.8953% 38 - C2 -2IPC - SECA_THET8 -
45 HHSearch 68.7051% 34 - C2 -1NKT - SECA1_MYCTU -
19 PsiBlast_PDB 68.3048% 33 - C2 -1NKT - SECA1_MYCTU -
44 HHSearch 68.1854% -27 - C2 -2FSF - SECA_ECOLI -
12 PsiBlast_PDB 68.1550% -26 - C2 -2FSH - SECA_ECOLI -
42 HHSearch 68.0353% 37 - C2 -2IPC - SECA_THET8 -
18 PsiBlast_PDB 67.9746% 30 - C2 -4YS0 6.6 SECA_THEMA
46 HHSearch 67.9649% 31 - C2 -4YS0 6.6 SECA_THEMA
17 PsiBlast_PDB 67.9146% 38 - C2 -3JUX 5.5 SECA_THEMA