@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu35660: (2016-07-30 )
MKKLKVMTVFGTRPEAIKMAPLVLELKKYPEIDSYVTVTAQHRQMLDQVLDAFHIKPDFDLNIMKERQTLAEITSNALVRLDELFKDIKPDIVLVHGDTTTTFAGSLAAFYHQIAVGHVEAGLRTGNKYSPFPEELNRQMTGAIADLHFAPTGQAKDNLLKENKKADSIFVTGNTAIDALNTTVRDGYSHPVLDQVGEDKMILLTAHRRENLGEPMENMFKAIRRIVGEFEDVQVVYPVHLNPVVREAAHKHFGDSDRVHLIEPLEVIDFHNFAAKSHFILTDSGGVQEEAPSLGKPVLVLRDTTERPEGVEAGTLKLAGTDEENIYQLAKQLLTDPDEYKKMSQASNPYGDGEASRRIVEELLFHYGYRKEQPDSFTGK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

UD1_A_3(4FKZ)
MNAA_BACSU
[Raw transfer]




UD1_B_5(4FKZ)
MNAA_BACSU
[Raw transfer]




UD1_A_3(4FKZ)
MNAA_BACSU
[Raw transfer]




UD1_A_3(3BEO)
?
[Raw transfer]




UD1_B_5(3BEO)
?
[Raw transfer]




GOL_A_4(1V4V)
?
[Raw transfer]




GOL_A_4(1V4V)
?
[Raw transfer]




TRS_A_2(4NEQ)
WECB_METJA
[Raw transfer]




21 PsiBlast_CBE 91.76100% -69 - C2 -4FKZ 9.9 MNAA_BACSU
1 PsiBlast_PDB 91.32100% -66 - C2 -4FKZ 10.0 MNAA_BACSU
9 PsiBlast_PDB 79.6944%-109 - C2 -1V4V 2.5 ?
3 PsiBlast_PDB 76.1171% -4 - C2 -3BEO 9.1 ?
4 PsiBlast_PDB 75.9562% -22 - C2 -3OT5 - ? -
22 PsiBlast_CBE 75.6871% -2 - C2 -3BEO 9.1 ?
7 PsiBlast_PDB 75.0454% -28 - C2 -1VGV - WECB_ECOLI -
26 HHSearch 74.7993% 24 - C2 -4FKZ 10.0 MNAA_BACSU
30 HHSearch 73.7249% -40 - C2 -3DZC - ? -
8 PsiBlast_PDB 73.2254% -29 - C2 -1F6D - WECB_ECOLI -
6 PsiBlast_PDB 72.8753% -27 - C2 -3DZC - ? -
23 PsiBlast_CBE 72.3053% -28 - C2 -3DZC - ? -
2 PsiBlast_PDB 71.8797% -32 - C2 -1O6C - MNAA_BACSU -
27 HHSearch 70.0060% 4 - C2 -3OT5 - ? -
5 PsiBlast_PDB 69.8654% 0 - C- -5DLD - ? -
29 HHSearch 69.8551% -7 - C2 -1VGV - WECB_ECOLI -
28 HHSearch 67.8844% -9 - C2 -1V4V 2.0 ?
49 Fugue 63.8854% 25 - C2 -1F6D - WECB_ECOLI -
10 PsiBlast_PDB 52.4335% 23 - C2 -4NEQ 3.5 WECB_METJA
11 PsiBlast_PDB 51.9627% 18 - C2 -4HWG - ? -