@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu35830: (2016-07-30 )
MKKQSNIWLYFFGALGGALYGYDTGVISGAILFMKKELGLNAFTEGLVVSSLLVGAILGSGAAGKLTDRFGRKKAIMAAALLFCIGGLGVALAPNTGVMVLFRIILGLAVGTSTTIVPLYLSELAPKHKRGALSSLNQLMITVGILLSYIVNYIFADAEAWRWMLGLAAVPSLLLLIGILFMPESPRWLFTNGEESKAKKILEKLRGTKDIDQEIHDIKEAEKQDEGGLKELFDPWVRPALIAGLGLAFLQQFIGTNTIIYYAPKTFTNVGFGNSASILGTVGIGTVNVLMTLVAIKIIDKIGRKPLLLFGNAGMVISLIVLALVNLFFDNTPAASWTTVICLGVFIVVFAVSWGPVVWVMLPELFPLHVRGIGTGVSTLMLHVGTLIVSLTYPILMEAIGISYLFLIYAAIGIMAFLFVRFKVTETKGRSLEEIEQDLRDKNGQGGAAGKQQTVGT

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MAL_A_2(4ZWB)
GTR3_HUMAN
[Raw transfer]




GLC_A_5(4ZW9)
GTR3_HUMAN
[Raw transfer]




BGC_A_2(4GBZ)
XYLE_ECOLI
[Raw transfer]




GLC_A_5(4ZW9)
GTR3_HUMAN
[Raw transfer]




MAL_A_5(4ZWC)
GTR3_HUMAN
[Raw transfer]




XYP_A_2(4GBY)
XYLE_ECOLI
[Raw transfer]




6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]




6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]




6BG_A_2(4GC0)
XYLE_ECOLI
[Raw transfer]




1 PsiBlast_PDB 79.0451%-156 - C1 -4LDS - ? -
21 HHSearch 79.0152%-148 - C1 -4LDS - ? -
42 Fugue 76.6135%-113 - C1 -4GC0 3.9 XYLE_ECOLI
7 PsiBlast_PDB 75.1530% -89 - C1 -4ZW9 4.2 GTR3_HUMAN
25 HHSearch 74.4231% -94 - C1 -4PYP - GTR1_HUMAN -
8 PsiBlast_PDB 74.1430% -87 - C1 -4ZWB 4.0 GTR3_HUMAN
9 PsiBlast_PDB 73.1230% -87 - C1 -4ZWC 3.5 GTR3_HUMAN
6 PsiBlast_PDB 72.7730% -90 - C1 -4PYP - GTR1_HUMAN -
4 PsiBlast_PDB 72.7634%-100 - C1 -4GC0 3.9 XYLE_ECOLI
3 PsiBlast_PDB 72.4234% -99 - C1 -4GBZ 3.5 XYLE_ECOLI
2 PsiBlast_PDB 71.5934%-100 - C1 -4GBY 3.1 XYLE_ECOLI
22 HHSearch 71.1236%-105 - C1 -4GC0 3.9 XYLE_ECOLI
10 PsiBlast_PDB 71.0030% -85 - C1 -5C65 - GTR3_HUMAN -
23 HHSearch 70.8032% -89 - C1 -4ZW9 4.2 GTR3_HUMAN
20 PsiBlast_CBE 69.1334%-101 - C1 -4JA3 - XYLE_ECOLI -
5 PsiBlast_PDB 68.0834%-107 - C1 -4JA4 - XYLE_ECOLI -
18 PsiBlast_CBE 67.7134%-101 - C1 -4JA4 - XYLE_ECOLI -
43 Fugue 67.6136%-118 - C1 -4QIQ - XYLE_ECOLI -
19 PsiBlast_CBE 67.3034%-103 - C1 -4JA4 - XYLE_ECOLI -
11 PsiBlast_PDB 66.9229% -98 - C1 -4YB9 - GTR5_BOVIN -