@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu35910: (2016-07-30 )
MATIKDVAGAAGVSVATVSRNLNDNGYVHEETRTRVIAAMAKLNYYPNEVARSLYKRESRLIGLLLPDITNPFFPQLARGAEDELNREGYRLIFGNSDEELKKELEYLQTFKQNHVAGIIAATNYPDLEEYSGMNYPVVFLDRTLEGAPSVSSDGYTGVKLAAQAIIHGKSQRITLLRGPAHLPTAQDRFNGALEILKQAEVDFQVIETASFSIKDAQSMAKELFASYPATDGVIASNDIQAAAVLHEALRRGKNVPEDIQIIGYDDIPQSGLLFPPLSTIKQPAYDMGKEAAKLLLGIIKKQPLAETAIQMPVTYIGRKTTRKED

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_B_1(1JH9)
PURR_ECOLI
[Raw transfer]

-

NACID_B_6(3OQO)
CCPA_BACSU
[Raw transfer]

-

NACID_B_1(2PUC)
PURR_ECOLI
[Raw transfer]

-

NACID_M_1(1QP7)
PURR_ECOLI
[Raw transfer]

-

CHAIN_O_1(1ZVV)
CCPA_BACSU
[Raw transfer]

-

NACID_E_5(3OQN)
CCPA_BACSU
[Raw transfer]

-

NACID_B_1(2PUE)
PURR_ECOLI
[Raw transfer]

-

NACID_B_1(1BDH)
PURR_ECOLI
[Raw transfer]

-

NACID_B_1(2PUA)
PURR_ECOLI
[Raw transfer]

-

CHAIN_T_2(1ZVV)
CCPA_BACSU
[Raw transfer]

-

CHAIN_R_3(1ZVV)
CCPA_BACSU
[Raw transfer]

-

NACID_E_5(3OQM)
CCPA_BACSU
[Raw transfer]

-

NACID_B_1(2PUD)
PURR_ECOLI
[Raw transfer]

-

NACID_E_5(3OQM)
CCPA_BACSU
[Raw transfer]

-

NACID_B_1(2PUF)
PURR_ECOLI
[Raw transfer]

-

NACID_E_3(1RZR)
CCPA_BACME
[Raw transfer]

-

NACID_B_1(2PUB)
PURR_ECOLI
[Raw transfer]

-

NACID_E_5(3OQN)
CCPA_BACSU
[Raw transfer]

-

NACID_M_1(1QQB)
PURR_ECOLI
[Raw transfer]

-

NACID_B_1(2PUG)
PURR_ECOLI
[Raw transfer]

-

NACID_M_1(1QQA)
PURR_ECOLI
[Raw transfer]

-

NACID_B_6(3OQO)
CCPA_BACSU
[Raw transfer]

-

NACID_B_6(3OQM)
CCPA_BACSU
[Raw transfer]

-

10 PsiBlast_PDB 81.3430% -13 - C2 -2PUA 4.2 PURR_ECOLI
13 PsiBlast_PDB 80.8030% -12 - C2 -2PUD 4.3 PURR_ECOLI
17 PsiBlast_PDB 80.6430% -12 - C2 -1BDH 4.3 PURR_ECOLI
9 PsiBlast_PDB 80.3830% -7 - C2 -1JH9 2.9 PURR_ECOLI
18 PsiBlast_PDB 80.2030% -11 - C2 -1QP7 4.1 PURR_ECOLI
16 PsiBlast_PDB 80.1630% -12 - C2 -2PUG 4.3 PURR_ECOLI
24 PsiBlast_CBE 79.9431% -20 - C2 -3OQM 0.6 CCPA_BACSU
11 PsiBlast_PDB 79.8730% -10 - C2 -2PUB 3.8 PURR_ECOLI
2 PsiBlast_PDB 79.8731% -20 - C2 -3OQO 0.2 CCPA_BACSU
14 PsiBlast_PDB 79.5730% -8 - C2 -2PUE 3.9 PURR_ECOLI
12 PsiBlast_PDB 79.5530% -14 - C2 -2PUC 4.1 PURR_ECOLI
58 HHSearch 79.1028% -21 - C2 -1QPZ - PURR_ECOLI -
3 PsiBlast_PDB 79.0131% -16 - C2 -3OQM 6.0 CCPA_BACSU
15 PsiBlast_PDB 78.8630% -11 - C2 -2PUF 3.7 PURR_ECOLI
19 PsiBlast_PDB 78.5830% -12 - C2 -1QQA 4.4 PURR_ECOLI
20 PsiBlast_PDB 78.5130% -10 - C2 -1QQB 5.2 PURR_ECOLI
4 PsiBlast_PDB 78.3131% -17 - C2 -3OQN 3.9 CCPA_BACSU
22 PsiBlast_CBE 78.1031% -14 - C2 -3OQO 5.4 CCPA_BACSU
53 HHSearch 77.9228%-113 - C2 -3JVD - ? -
23 PsiBlast_CBE 77.8831% -16 - C2 -3OQN 6.1 CCPA_BACSU
31 PsiBlast_CBE 74.3231% -4 - C2 -1ZVV 3.1 CCPA_BACSU
30 PsiBlast_CBE 74.2131% -2 - C2 -1ZVV 4.9 CCPA_BACSU
8 PsiBlast_PDB 73.4431% 0 - C2 -1RZR 2.4 CCPA_BACME
7 PsiBlast_PDB 72.9131% -1 - C2 -1ZVV 3.8 CCPA_BACSU