@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu37230: (2016-08-01 )
MLRQFFSYYKPYKTLFFLDFFSAIAGGLMELSFPLIVNYFIDTLLPGRDWGLIIATSIGLFAVYALSSALQYIVTYWGHMLGINIETDMRKSLFDHLQKLSFKFYDNNKTGTLMSKLTNDLMYIGEVAHHGPEDLFIAVMTILGAFGVMLFINWQLALLTFIIMPIVIWLALYFNKKMTKAFTTLNKDIGDFSARVENNIGGIRLVQAFGNEAFEKERFAVNNQRFRVTKLSSYKIMAKNGSISYMLTRFVTLFVLLCGTWFVIRGSLSYGEFVAFVLLTNVLFRPIDKINAIIEMYPRGIAGFKSYMELMETEPDIQDSPDSKDVSGLKGNIRYKHVSFGYDDHHNVLNDINLSIQAGETVAFVGPSGAGKSTLCSLLPRFYEASEGDITIDGISIKDMTLSSLRGQIGVVQQDVFLFSGTLRENIAYGRLGASEEDIWQAVKQAHLEELVHNMPDGLDTMIGERGVKLSGGQKQRLSIARMFLKNPSILILDEATSALDTETEAAIQKALQELSEGRTTLVIAHRLATIKDADRIVVVTNNGIEEQGRHQDLIEAGGLYSRLHQAQFGQMVHR

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]




107 HHSearch 80.4732%-135 - C2 -4Q4H - Y288_THEMA -
9 PsiBlast_PDB 80.1634% - - C2 -3B5X - MSBA_VIBCH -
22 PsiBlast_CBE 76.2638% -35 - C2 -2HYD - Y1866_STAAM -
21 PsiBlast_CBE 76.0138% -34 - C2 -2ONJ - Y1866_STAAM -
2 PsiBlast_PDB 75.4538% -33 - C2 -2ONJ - Y1866_STAAM -
1 PsiBlast_PDB 75.4238% -34 - C2 -2HYD - Y1866_STAAM -
106 HHSearch 74.9031% - - C2 -3B5X - MSBA_VIBCH -
109 HHSearch 74.7039% -34 - C2 -4A82 - Y1866_STAAM -
3 PsiBlast_PDB 74.6338% -33 - C2 -4A82 - Y1866_STAAM -
117 HHSearch 73.7930% 0 - C- -4Q9H - MDR1A_MOUSE -
28 PsiBlast_CBE 73.7436% - - C2 -3B5Z - MSBA_SALTY -
11 PsiBlast_PDB 73.7436% - - C2 -3B5Z - MSBA_SALTY -
27 PsiBlast_CBE 73.7336% - - C2 -3B5Z - MSBA_SALTY -
26 PsiBlast_CBE 73.7336% - - C2 -3B5Z - MSBA_SALTY -
31 PsiBlast_CBE 73.6736% - - C2 -3B5Y - MSBA_SALTY -
30 PsiBlast_CBE 73.6736% - - C2 -3B5Y - MSBA_SALTY -
29 PsiBlast_CBE 73.6636% - - C2 -3B5Y - MSBA_SALTY -
10 PsiBlast_PDB 73.6636% - - C2 -3B5Y - MSBA_SALTY -
118 HHSearch 72.9229% 0 - C- -4F4C - PGP1_CAEEL -
104 HHSearch 72.5829%-136 - C2 -4RY2 - ? -
83 PsiBlast_CBE 48.5643% -16 - C2 -1XEF 6.8 HLYBP_ECOLX
82 PsiBlast_CBE 47.1643% -8 - C2 -1XEF 3.1 HLYBP_ECOLX
71 PsiBlast_CBE 47.1043% -13 - C2 -2FGK 3.1 HLYBP_ECOLX
72 PsiBlast_CBE 46.7243% -6 - C2 -2FGK 7.6 HLYBP_ECOLX