@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu37560: (2016-08-02 )
MSKHVHIQLPDGQIQEYPKGITIKEAAGSISSSLQKKAAAGQVNGKLVDLSFKLEEDAELSIVTLDSQEGLQVLRHTTAHVLAQAVKRLYGEVSLGVGPVILDGFYYDMKLGKSLASGDLEAIEKEMKNIINENLEIKRIEVSYEEAEELFAQKDERLKLEILKDIPRGEDITLYQQGEFVDLCRGPHLPSTGMIKAFKLTRVSGAYWRGDSKNEVLQRVYGVAFQKKKDLDAHLHMLEEAAKRDHRKLGKQLGLFMFSEEAPGMPFYLPKGQIVRNELERFSRELQTNAGYDEVRTPFMMNQRLWEQSGHWDHYRDNMYFSEVDDTRFAMKPMNCPGHMLIFKNSLYSYRDLPIRMAEFGQVHRHEYSGALNGMLRVRTFCQDDAHIFVREDQIESEIKEAIRLIDEVYRTFGFEYSVELSTRPEDSLGDDSLWEASERALARVLEELGLSYEINEGDGAFYGPKIDFHIKDALKRSHQCATIQLDFQMPEKFDLTYINELNEKVRPVVIHRAVFGSIDRFFGILIEHYGGAFPVWLAPIQVQIIPVSHVHLDYCRKVQAELKQAGIRAGIDERNEKLGYKIRESQVQKIPYVLVLGDHEEQENAVNVRRFGHQQNEHVPFQTFKDKLVKQVENRGM

Atome Classification :

(38 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

TSB_A_6(4YYE)
SYTM_YEAST
[Raw transfer]




TSB_B_11(4YYE)
SYTM_YEAST
[Raw transfer]




TSB_A_3(3UH0)
SYTM_YEAST
[Raw transfer]




409_A_4(4HWO)
SYT_ECOLI
[Raw transfer]




TSB_A_3(3UH0)
SYTM_YEAST
[Raw transfer]




409_B_6(4HWO)
SYT_ECOLI
[Raw transfer]




SSA_A_5(1FYF)
SYT_ECOLI
[Raw transfer]




SSA_B_6(1FYF)
SYT_ECOLI
[Raw transfer]




1B2_A_4(4HWR)
SYT_ECOLI
[Raw transfer]




1B2_B_6(4HWR)
SYT_ECOLI
[Raw transfer]




1B3_B_6(4HWS)
SYT_ECOLI
[Raw transfer]




1B3_A_4(4HWS)
SYT_ECOLI
[Raw transfer]




X16_A_4(4HWP)
SYT_ECOLI
[Raw transfer]




X16_B_6(4HWP)
SYT_ECOLI
[Raw transfer]




1B2_B_6(4HWT)
SYTC_HUMAN
[Raw transfer]




1B2_A_4(4HWT)
SYTC_HUMAN
[Raw transfer]




AMP_A_4(1QF6)
SYT_ECOLI
[Raw transfer]




1B2_A_4(4HWT)
SYTC_HUMAN
[Raw transfer]




THR_B_5(1EVK)
SYT_ECOLI
[Raw transfer]




2CR_B_9(4P3O)
SYT_ECOLI
[Raw transfer]




2CR_B_8(4P3P)
SYT_ECOLI
[Raw transfer]




2CR_A_4(4P3P)
SYT_ECOLI
[Raw transfer]




2CR_A_4(4P3O)
SYT_ECOLI
[Raw transfer]




71 HHSearch 84.8552% -16 - C2 -1NYR - SYT_STAAW -
2 PsiBlast_PDB 83.7651% -15 - C2 -1NYR - SYT_STAAW -
70 HHSearch 83.6146% -28 - C2 -1QF6 6.5 SYT_ECOLI
1 PsiBlast_PDB 83.5051% -17 - C2 -1NYQ - SYT_STAAW -
3 PsiBlast_PDB 82.9148% -33 - C1 -1QF6 - SYT_ECOLI -
22 PsiBlast_CBE 80.7651% -13 - C2 -1NYQ - SYT_STAAW -
21 PsiBlast_CBE 80.2551% -11 - C2 -1NYR - SYT_STAAW -
14 PsiBlast_PDB 68.6849%-104 - C2 -4HWT 4.8 SYTC_HUMAN
15 PsiBlast_PDB 68.6148% -83 - C2 -4P3N - SYTC_HUMAN -
75 HHSearch 67.9247% -73 - C2 -4HWT 4.8 SYTC_HUMAN
72 HHSearch 67.4848% -46 * C2 *1EVL - SYT_ECOLI -
42 PsiBlast_CBE 67.4648% -83 - C2 -4P3N - SYTC_HUMAN -
41 PsiBlast_CBE 67.4349% -80 - C2 -4HWT 5.6 SYTC_HUMAN
44 PsiBlast_CBE 66.7148% -78 - C2 -4P3N - SYTC_HUMAN -
47 PsiBlast_CBE 66.4948% -83 - C2 -4TTV - SYTC_HUMAN -
43 PsiBlast_CBE 66.4648% -83 - C2 -4P3N - SYTC_HUMAN -
45 PsiBlast_CBE 65.9048% -82 - C2 -4TTV - SYTC_HUMAN -
46 PsiBlast_CBE 65.8848% -85 - C2 -4TTV - SYTC_HUMAN -
34 PsiBlast_CBE 65.6650% -50 - C2 -1FYF 8.6 SYT_ECOLI
9 PsiBlast_PDB 65.5650% -51 - C2 -1EVL - SYT_ECOLI -
38 PsiBlast_CBE 65.5150% -47 - C2 -1EVK 3.2 SYT_ECOLI
6 PsiBlast_PDB 65.1750% -51 - C2 -4HWR 6.8 SYT_ECOLI
40 PsiBlast_CBE 64.7950% -47 - C2 -4P3O 8.0 SYT_ECOLI
10 PsiBlast_PDB 64.7850% -53 - C2 -1FYF 8.5 SYT_ECOLI
13 PsiBlast_PDB 64.7450% -46 - C2 -4P3P 7.8 SYT_ECOLI
24 PsiBlast_CBE 64.7150% -56 - C2 -4HWR 7.5 SYT_ECOLI
23 PsiBlast_CBE 64.5450% -51 - C2 -4HWS 9.7 SYT_ECOLI
25 PsiBlast_CBE 64.5150% -51 - C2 -4HWP 8.5 SYT_ECOLI
5 PsiBlast_PDB 64.1050% -53 - C2 -4HWP 8.1 SYT_ECOLI
26 PsiBlast_CBE 63.9750% -50 - C2 -4HWO 8.6 SYT_ECOLI
39 PsiBlast_CBE 63.4250% -45 - C2 -4P3P 7.8 SYT_ECOLI
4 PsiBlast_PDB 63.3550% -50 - C2 -4HWO 8.7 SYT_ECOLI
12 PsiBlast_PDB 63.2750% -46 - C2 -4P3O 7.8 SYT_ECOLI
7 PsiBlast_PDB 62.0550% -52 - C2 -4HWS 9.7 SYT_ECOLI
73 HHSearch 59.4241% 0 - C2 -3UH0 8.5 SYTM_YEAST
20 PsiBlast_PDB 54.6341% -5 - C2 -4YYE 9.0 SYTM_YEAST
48 PsiBlast_CBE 54.0041% -5 - C2 -4YYE 9.1 SYTM_YEAST
19 PsiBlast_PDB 53.5841% 3 - C2 -3UH0 8.5 SYTM_YEAST