@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu37690: (2016-08-02 )
MEITPSDVIKTLPRQEFSLVFQKVKEMEKTGAHIINLGQGNPDLPTPPHIVEALREASLNPSFHGYGPFRGYPFLKEAIAAFYKREYGVTINPETEVALFGGGKAGLYVLTQCLLNPGDIALVPNPGYPEYLSGITMARAELYEMPLYEENGYLPDFEKIDPAVLEKAKLMFLNYPNNPTGAVADAAFYAKAAAFAKEHNIHLIHDFAYGAFEFDQKPASFLEAEDAKTVGAELYSFSKTFNMAGWRMAFAVGNEKIIQAVNEFQDHVFVGMFGGLQQAASAALSGDPEHTESLKRIYKERIDFFTALCEKELGWKMEKPKGTFYVWAEIPNTFETSHQFSDYLLEHAHVVVTPGEIFGSNGKRHVRISMVSKQEDLREFVTRIQKLNLPFGSLQETSR

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PLP_A_2(2O1B)
?
[Raw transfer]



EPE_G_7(2DOU)
?
[Raw transfer]



GLU_C_3(1GDE)
?
[Raw transfer]



EPE_G_7(2DOU)
?
[Raw transfer]



GLU_D_4(1GDE)
?
[Raw transfer]



PLP_A_12(1O4S)
AAT_THEMA
[Raw transfer]



PLP_A_5(1B5O)
AAT_THET8
[Raw transfer]



ASP_C_3(1GCK)
AAT_THET8
[Raw transfer]



PLP_A_5(1B5P)
AAT_THET8
[Raw transfer]
21 PsiBlast_CBE 91.9236% -51 - C1 -2X5D - ? -
1 PsiBlast_PDB 90.1236% -54 - C1 -2X5D - ? -
22 PsiBlast_CBE 87.9036% -55 - C1 -2X5D - ? -
23 PsiBlast_CBE 85.3936% -47 - C1 -2X5D - ? -
33 HHSearch 83.3439% -2 - C1 -2O1B 4.4 ?
49 HHSearch 79.3031% -60 - C1 -2DOU 3.0 ?
34 HHSearch 76.4831% -49 - C1 -1GD9 - ? -
32 HHSearch 74.5929% -44 - C1 -1O4S - AAT_THEMA -
31 HHSearch 74.3726% -45 * C1 *1J32 - ? -
37 HHSearch 73.6029% -49 - C1 -1B5P - AAT_THET8 -
27 PsiBlast_CBE 72.9732% -10 - C1 -2DOU - ? -
46 HHSearch 71.4837% 7 - C1 -2X5D - ? -
5 PsiBlast_PDB 69.9432% -9 - C1 -2DOU 3.0 ?
26 PsiBlast_CBE 68.9931% -23 - C1 -1GD9 - ? -
3 PsiBlast_PDB 67.8931% -22 - C1 -1GDE 2.9 ?
4 PsiBlast_PDB 65.6431% -23 - C1 -1GD9 - ? -
25 PsiBlast_CBE 65.6231% -23 - C1 -1GDE 2.4 ?
50 HHSearch 65.4027% -44 - C1 -3H14 - ? -
47 HHSearch 65.3522% -37 - C1 -3E2Y - KAT3_MOUSE -
30 PsiBlast_CBE 65.3431% -23 - C1 -1BKG - AAT_THET8 -
13 PsiBlast_PDB 61.8530% -14 - C1 -1O4S 4.1 AAT_THEMA
6 PsiBlast_PDB 61.7630% -20 - C1 -1B5O 4.1 AAT_THET8
8 PsiBlast_PDB 60.1430% -22 - C1 -1B5P 3.7 AAT_THET8
7 PsiBlast_PDB 59.8130% -23 - C1 -1GCK 2.7 AAT_THET8