@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu37840: (2016-08-03 )
MKGVILAGGNGSRLMPLTKAVNKHLLPVGPYPMIYWSIMKLQEAGIKDILLISQKEHMPQFYKLLGNGEELGVTITYQVQPAASGISDGLSYAKRFTKKESFILLLGDNIFEDSLKPYTERFEQQGKGAKVLLKEVDDPERFGIAEIDEKNKRIRSIIEKPEQPPTNLCVTGIYMYDAEVFSYIEQISPSKRGELEITDVNNLYIENSQLTYDVLSGWWVDAGTHESLYLASQLVHQALRKGQDEK

Atome Classification :

(66 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

UPG_H_8(1MP5)
RMLA_SALTY
[Raw transfer]




GDU_A_3(4HO9)
?
[Raw transfer]




UPG_E_5(1IIN)
RMLA_SALTY
[Raw transfer]




UPG_C_16(4HO8)
?
[Raw transfer]




UPG_B_10(4HO8)
?
[Raw transfer]




DAU_A_3(4HO5)
?
[Raw transfer]




UD1_B_6(4HOC)
?
[Raw transfer]




GDU_B_10(4HO9)
?
[Raw transfer]




UPG_H_8(1IIN)
RMLA_SALTY
[Raw transfer]




UPG_D_22(4HO8)
?
[Raw transfer]




UPG_A_2(4HO6)
?
[Raw transfer]




UPG_F_6(1IIN)
RMLA_SALTY
[Raw transfer]




UPG_F_6(1MP4)
RMLA_SALTY
[Raw transfer]




UPG_A_5(4HO8)
?
[Raw transfer]




DAU_B_9(1H5T)
RMLA1_ECOLI
[Raw transfer]




DAU_A_2(4ECM)
?
[Raw transfer]




UPG_F_6(1MP5)
RMLA_SALTY
[Raw transfer]




UD1_A_3(4HOC)
?
[Raw transfer]




DAU_A_2(4ECM)
?
[Raw transfer]




UPG_E_5(1MP4)
RMLA_SALTY
[Raw transfer]




UPG_E_5(1MP5)
RMLA_SALTY
[Raw transfer]




DAU_C_11(1H5T)
RMLA1_ECOLI
[Raw transfer]




TRH_N_14(1G3L)
?
[Raw transfer]




TRH_L_12(1G3L)
?
[Raw transfer]




DAU_A_7(1H5T)
RMLA1_ECOLI
[Raw transfer]




TRH_J_10(1G3L)
?
[Raw transfer]




DAU_D_13(1H5T)
RMLA1_ECOLI
[Raw transfer]




DAU_B_8(4HO5)
?
[Raw transfer]




TRH_P_16(1G3L)
?
[Raw transfer]




UPG_G_7(1MP5)
RMLA_SALTY
[Raw transfer]




UPG_G_7(1IIN)
RMLA_SALTY
[Raw transfer]




TTP_A_5(1MC3)
RMLA2_ECOLI
[Raw transfer]




TTP_E_5(1IIM)
RMLA_SALTY
[Raw transfer]




TTP_A_5(1MC3)
RMLA2_ECOLI
[Raw transfer]




TTP_A_2(4HO3)
?
[Raw transfer]




TTP_E_5(1IIM)
RMLA_SALTY
[Raw transfer]




TTP_E_5(1MP3)
RMLA_SALTY
[Raw transfer]




TTP_I_9(1IIM)
RMLA_SALTY
[Raw transfer]




TTP_I_9(1MP3)
RMLA_SALTY
[Raw transfer]




GOL_A_26(1LVW)
?
[Raw transfer]




TMP_A_6(1H5S)
RMLA1_ECOLI
[Raw transfer]




TYD_A_12(1LVW)
?
[Raw transfer]




SUC_A_2(3HL3)
?
[Raw transfer]




TMP_C_10(1H5S)
RMLA1_ECOLI
[Raw transfer]




DGT_B_9(3PKQ)
RMLA_SALTY
[Raw transfer]




THM_A_5(5IDT)
?
[Raw transfer]




TMP_D_12(1H5S)
RMLA1_ECOLI
[Raw transfer]




DGT_D_15(3PKQ)
RMLA_SALTY
[Raw transfer]




THM_B_8(4HO4)
?
[Raw transfer]




DGT_A_5(3PKQ)
RMLA_SALTY
[Raw transfer]




G1P_A_5(1H5R)
RMLA1_ECOLI
[Raw transfer]




G1P_A_3(4HO4)
?
[Raw transfer]




G1P_A_3(4HO4)
?
[Raw transfer]




THM_D_10(5IDT)
?
[Raw transfer]




DGT_C_12(3PKQ)
RMLA_SALTY
[Raw transfer]




TMP_B_8(1H5S)
RMLA1_ECOLI
[Raw transfer]




G1P_B_6(1H5R)
RMLA1_ECOLI
[Raw transfer]




G1P_D_8(1H5R)
RMLA1_ECOLI
[Raw transfer]




THM_A_2(4HO2)
?
[Raw transfer]




G1P_C_7(1H5R)
RMLA1_ECOLI
[Raw transfer]




120 HHSearch 94.6054%-127 - C1 -4ECM 8.5 ?
1 PsiBlast_PDB 93.8554%-134 - C1 -3HL3 3.9 ?
2 PsiBlast_PDB 93.0954%-126 - C1 -4ECM 8.5 ?
51 PsiBlast_CBE 79.3143% -60 - C1 -5IFY - ? -
52 PsiBlast_CBE 78.6243% -66 - C1 -5IFY - ? -
114 HHSearch 78.0645% -61 - C1 -1MC3 6.1 RMLA2_ECOLI
12 PsiBlast_PDB 77.5643% -54 - C1 -1MC3 6.1 RMLA2_ECOLI
19 PsiBlast_PDB 77.4343% -63 - C1 -1H5T 5.6 RMLA1_ECOLI
18 PsiBlast_PDB 77.2443% -62 - C1 -1H5R 4.7 RMLA1_ECOLI
50 PsiBlast_CBE 77.0943% -63 - C1 -5IFY - ? -
13 PsiBlast_PDB 77.0243% -63 - C1 -1IIM 7.1 RMLA_SALTY
53 PsiBlast_CBE 76.7443% -66 - C1 -5IFY - ? -
49 PsiBlast_CBE 76.6243% -61 - C1 -1H5R 2.4 RMLA1_ECOLI
23 PsiBlast_CBE 76.4847% -54 - C1 -4HO8 4.9 ?
48 PsiBlast_CBE 76.3443% -60 - C1 -1H5R 3.2 RMLA1_ECOLI
31 PsiBlast_CBE 76.3243% -63 - C1 -1IIM 5.0 RMLA_SALTY
121 HHSearch 76.2946% -57 - C1 -4HO4 2.8 ?
54 PsiBlast_CBE 76.2643% -62 - C1 -5IFY - ? -
20 PsiBlast_PDB 76.2343% -65 - C1 -5IFY - ? -
16 PsiBlast_PDB 76.1943% -62 - C1 -3PKP - RMLA_SALTY -
113 HHSearch 76.1041% -69 - C1 -1LVW 2.9 ?
9 PsiBlast_PDB 76.0347% -55 - C1 -4HO8 5.9 ?
10 PsiBlast_PDB 75.7847% -55 - C1 -4HO9 5.9 ?
58 PsiBlast_CBE 75.7642% -64 - C1 -1MP5 4.7 RMLA_SALTY
24 PsiBlast_CBE 75.4847% -58 - C1 -4HO8 5.6 ?
28 PsiBlast_CBE 75.4243% -58 - C1 -1IIN 5.7 RMLA_SALTY
55 PsiBlast_CBE 75.3243% -64 - C1 -1H5S 3.4 RMLA1_ECOLI
44 PsiBlast_CBE 75.3043% -57 - C1 -1H5T 5.8 RMLA1_ECOLI
15 PsiBlast_PDB 75.1643% -59 - C1 -1H5S 3.9 RMLA1_ECOLI
4 PsiBlast_PDB 74.9447% -57 - C1 -4HO2 3.7 ?
6 PsiBlast_PDB 74.8047% -56 - C1 -4HO4 2.8 ?
29 PsiBlast_CBE 74.7643% -58 - C1 -1IIN 4.8 RMLA_SALTY
25 PsiBlast_CBE 74.7447% -54 - C1 -4HO8 5.8 ?
47 PsiBlast_CBE 74.5943% -58 - C1 -1H5R 3.5 RMLA1_ECOLI
46 PsiBlast_CBE 74.5443% -64 - C1 -1H5S 3.6 RMLA1_ECOLI
59 PsiBlast_CBE 74.4542% -65 - C1 -1MP5 4.9 RMLA_SALTY
5 PsiBlast_PDB 74.4547% -57 - C1 -4HO3 5.7 ?
57 PsiBlast_CBE 74.2142% -61 - C1 -1MP3 7.5 RMLA_SALTY
45 PsiBlast_CBE 74.2143% -57 - C1 -1H5T 6.2 RMLA1_ECOLI
27 PsiBlast_CBE 74.0947% -59 - C1 -4HO4 3.6 ?
65 PsiBlast_CBE 73.8641% -63 - C1 -1MP4 4.9 RMLA_SALTY
22 PsiBlast_CBE 73.8447% -59 - C1 -4HO9 6.0 ?
14 PsiBlast_PDB 73.8343% -62 - C1 -1IIN 5.8 RMLA_SALTY
11 PsiBlast_PDB 73.8347% -57 - C1 -4HOC 5.2 ?
7 PsiBlast_PDB 73.7847% -53 - C1 -4HO5 6.3 ?
62 PsiBlast_CBE 73.7341% -60 - C1 -5IDT 3.7 ?
41 PsiBlast_CBE 73.4943% -64 - C1 -3PKQ 5.7 RMLA_SALTY
8 PsiBlast_PDB 73.4147% -54 - C1 -4HO6 5.7 ?
43 PsiBlast_CBE 73.2643% -57 - C1 -1H5T 5.4 RMLA1_ECOLI
42 PsiBlast_CBE 72.3843% -62 - C1 -1H5S 2.7 RMLA1_ECOLI
76 PsiBlast_CBE 72.3742% -43 - C1 -1G3L 6.6 ?
56 PsiBlast_CBE 72.1942% -59 - C1 -1MP3 5.0 RMLA_SALTY
30 PsiBlast_CBE 72.1843% -61 - C1 -1IIN 6.9 RMLA_SALTY
60 PsiBlast_CBE 72.1442% -65 - C1 -1MP5 5.1 RMLA_SALTY
21 PsiBlast_CBE 71.9847% -61 - C1 -4HOC 5.6 ?
115 HHSearch 71.8342% -16 * C1 *1IIM 7.1 RMLA_SALTY
26 PsiBlast_CBE 71.5447% -56 - C1 -4HO5 5.6 ?
17 PsiBlast_PDB 71.3943% -61 - C1 -3PKQ 5.5 RMLA_SALTY
61 PsiBlast_CBE 70.7142% -61 - C1 -1MP5 5.0 RMLA_SALTY
40 PsiBlast_CBE 70.0043% -63 - C1 -3PKQ 5.2 RMLA_SALTY
66 PsiBlast_CBE 69.7641% -58 - C1 -1MP4 4.7 RMLA_SALTY
64 PsiBlast_CBE 69.4741% -56 - C1 -5IDT 4.0 ?
39 PsiBlast_CBE 68.8843% -64 - C1 -3PKQ 5.3 RMLA_SALTY
78 PsiBlast_CBE 68.8142% -45 - C1 -1G3L 6.4 ?
77 PsiBlast_CBE 67.6842% -42 - C1 -1G3L 6.0 ?
75 PsiBlast_CBE 67.3042% -45 - C1 -1G3L 7.0 ?