@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu37890: (2016-08-03 )
MVQKRNHFLPYSLPLIGKEEIQEVTETLESGWLSKGPKVQQFEKEFAAFVGAKHAVAVNSCTAALFLALKAKGIGPGDEVITSPLTFSSTANTIIHTGATPVFADIDENTLNIDPVKLEAAVTPRTKAVVPVHFGGQSCDMDAILAVAQNHGLFVLEDAAHAVYTTYKQRMIGSIGDATAFSFYATKNLATGEGGMLTTDDEELADKIRVLSLHGMSKAAWNRYSSNGSWYYEVESPGYKMNMFDLQAALGLHQLKRLDDMQKRREEIAGRYQTAFQQIPGLITPFVHDDGRHAWHLYVLQVDEKKAGVTRSEMITALKDEYNIGTSVHFIPVHIHPYYQKQFGYKEADFPNAMNYYKRTLSLPLYPSMSDDDVDDVIEAVRDIVKGAD

Atome Classification :

(33 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PMP_A_2(1MDO)
ARNB_SALTY
[Raw transfer]




PMP_A_2(1MDO)
ARNB_SALTY
[Raw transfer]




PMP_C_3(2FNU)
PSEC_HELPY
[Raw transfer]




2QR_A_2(4OCA)
?
[Raw transfer]




PMP_C_3(2FNU)
PSEC_HELPY
[Raw transfer]




PMP_E_5(2FNU)
PSEC_HELPY
[Raw transfer]




PXG_A_2(1B9I)
RIFK_AMYMS
[Raw transfer]




T4K_A_3(2PO3)
?
[Raw transfer]




T4K_B_4(2PO3)
?
[Raw transfer]




PLP_A_2(1MDX)
ARNB_SALTY
[Raw transfer]




PLP_A_3(1MDZ)
ARNB_SALTY
[Raw transfer]




PLP_B_4(2FNI)
PSEC_HELPY
[Raw transfer]




PLP_A_3(2FNI)
PSEC_HELPY
[Raw transfer]




PLP_C_3(1B9H)
RIFK_AMYMS
[Raw transfer]




CIT_B_9(4LC3)
?
[Raw transfer]




CIT_A_3(4LC3)
?
[Raw transfer]




CIT_A_3(4LC3)
?
[Raw transfer]




AKG_A_3(1MDX)
ARNB_SALTY
[Raw transfer]




EDO_A_6(3UWC)
?
[Raw transfer]




EDO_A_5(4K2I)
NTDA_BACSU
[Raw transfer]




EDO_B_17(4K2I)
NTDA_BACSU
[Raw transfer]




EDO_B_10(4K2M)
NTDA_BACSU
[Raw transfer]




3 PsiBlast_PDB 97.3044%-110 - C1 -4OCA 6.3 ?
4 PsiBlast_PDB 96.4744%-107 - C1 -1MDO 4.8 ARNB_SALTY
63 HHSearch 95.8543%-106 - C1 -1MDO 4.8 ARNB_SALTY
2 PsiBlast_PDB 95.3944%-110 - C1 -1MDZ 3.5 ARNB_SALTY
1 PsiBlast_PDB 93.5444%-109 - C1 -1MDX 3.5 ARNB_SALTY
60 HHSearch 89.7640% -78 - C1 -4LC3 2.8 ?
21 PsiBlast_CBE 89.1939% -79 - C1 -4LC3 2.9 ?
5 PsiBlast_PDB 87.3939% -79 - C1 -4LC3 2.8 ?
27 PsiBlast_CBE 81.7136% -51 - C1 -2OGA - DESV_STRVZ -
8 PsiBlast_PDB 81.7136% 0 - C- -2OGE - DESV_STRVZ -
64 HHSearch 81.4241% -34 - C1 -3DR4 - GDPPS_CAUCR -
61 HHSearch 80.3038% -49 - C1 -2OGA - DESV_STRVZ -
69 HHSearch 80.2034% -70 - C1 -4K2M - NTDA_BACSU -
26 PsiBlast_CBE 79.1536% -50 - C1 -2OGA - DESV_STRVZ -
25 PsiBlast_CBE 78.8636% -52 - C1 -2OGA - DESV_STRVZ -
7 PsiBlast_PDB 78.7936% -48 - C1 -2OGA - DESV_STRVZ -
6 PsiBlast_PDB 76.4641% -17 - C1 -3DR4 - GDPPS_CAUCR -
23 PsiBlast_CBE 75.2641% -17 - C1 -3DR4 - GDPPS_CAUCR -
22 PsiBlast_CBE 74.8341% -16 - C1 -3DR4 - GDPPS_CAUCR -
24 PsiBlast_CBE 74.7641% -16 - C1 -3DR4 - GDPPS_CAUCR -
15 PsiBlast_PDB 69.9837% -20 - C1 -2PO3 7.2 ?
34 PsiBlast_CBE 67.9137% -16 - C1 -2PO3 6.4 ?
68 HHSearch 66.6632% 3 - C1 -3UWC Error ?
32 PsiBlast_CBE 66.0233% 24 - C1 -4K2M 2.6 NTDA_BACSU
33 PsiBlast_CBE 65.3333% 23 - C1 -4K2I 2.6 NTDA_BACSU
53 HHSearch 65.0632% 6 - C1 -2FNU 5.1 PSEC_HELPY
13 PsiBlast_PDB 65.0033% 25 - C1 -4K2I 2.5 NTDA_BACSU
12 PsiBlast_PDB 64.1332% -6 - C1 -2FNU 5.1 PSEC_HELPY
29 PsiBlast_CBE 63.8832% -7 - C1 -2FNU 5.1 PSEC_HELPY
30 PsiBlast_CBE 62.6332% -7 - C1 -2FNI 1.2 PSEC_HELPY
11 PsiBlast_PDB 61.5732% -9 - C1 -2FNI 4.4 PSEC_HELPY
49 PsiBlast_CBE 27.4635% -1 - C1 -1B9I 6.1 RIFK_AMYMS
48 PsiBlast_CBE 25.5735% -0 - C1 -1B9H 4.0 RIFK_AMYMS