@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu38160: (2016-08-03 )
MKFKWDEFFVTGDPLILGAQVSIALSTIAIIFVLTYFKKWKWLWSEWITTVDHKKLGIMYIISAVIMLFRGGVDGLMMRAQLALPNNSFLDSNHYNEIFTTHGTIMIIFMAMPFLIGLINVVVPLQIGARDVAFPYLNNLSFWTFFVGAMLFNISFVIGGSPNAGWTSYMPLASNDMSPGPGENYYLLGLQIAGIGTLMTGINFMVTILKMRTKGMTLMRMPMFTWTTLITMVIIVFAFPVLTVALALLSFDRLFGAHFFTLEAGGMPMLWANLFWIWGHPEVYIVILPAFGIFSEIISSFARKQLFGYKAMVGSIIAISVLSFLVWTHHFFTMGNSASVNSFFSITTMAISIPTGVKIFNWLFTMYKGRISFTTPMLWALAFIPNFVIGGVTGVMLAMAAADYQYHNTYFLVSHFHYVLIAGTVFACFAGFIFWYPKMFGHKLNERIGKWFFWIFMIGFNICFFPQYFLGLQGMPRRIYTYGPNDGWTTLNFISTVGAFMMGVGFLILCYNIYYSFRYSTREISGDSWGVGRTLDWATSSAIPPHYNFAVLPEVKSQDAFLHMKEEKTELYPESKFKKIHMPSNSGRPFFMSVAFGLAGFGLVFEWYWMGVVGLIGVLLCMVLRSFEYDNGYYISVDEIKETERKISE

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

HEA_A_6(3HB3)
COX1B_PARDE
[Raw transfer]



HEA_A_11(1AR1)
COX1B_PARDE
[Raw transfer]



HEA_A_11(1AR1)
COX1B_PARDE
[Raw transfer]



HEA_A_6(3EHB)
COX1B_PARDE
[Raw transfer]
28 PsiBlast_CBE 84.7939% 0 - C- -1M57 - COX1_RHOSH -
27 PsiBlast_CBE 84.7939% 0 - C- -1M56 - COX1_RHOSH -
8 PsiBlast_PDB 84.7939% 0 - C- -1M57 - COX1_RHOSH -
3 PsiBlast_PDB 84.7939% 0 - C- -1M56 - COX1_RHOSH -
46 HHSearch 84.6939% 0 - C- -1V54 - COX1_BOVIN -
45 HHSearch 84.0340% 0 - C- -2GSM - COX1_RHOSH -
20 PsiBlast_PDB 82.8638% 0 - C- -2DYS - COX1_BOVIN -
19 PsiBlast_PDB 82.8638% 0 - C- -2DYR - COX1_BOVIN -
18 PsiBlast_PDB 82.8638% 0 - C- -1V55 - COX1_BOVIN -
17 PsiBlast_PDB 82.8638% 0 - C- -1V54 - COX1_BOVIN -
4 PsiBlast_PDB 82.8139% 0 - C- -2GSM - COX1_RHOSH -
26 PsiBlast_CBE 82.6639% 0 - C- -2GSM - COX1_RHOSH -
22 PsiBlast_CBE 82.3143%-151 - C1 -2YEV - COX13_THET8 -
2 PsiBlast_PDB 82.2243%-151 - C1 -2YEV - COX13_THET8 -
44 HHSearch 81.7739%-157 - C1 -2YEV - COX13_THET8 -
21 PsiBlast_CBE 79.3951%-153 - C1 -1FFT - CYOB_ECOLI -
1 PsiBlast_PDB 79.2751%-154 - C1 -1FFT - CYOB_ECOLI -
43 HHSearch 78.8251%-155 - C1 -1FFT - CYOB_ECOLI -
12 PsiBlast_PDB 75.3338%-136 - C1 -3EHB 12.3 COX1B_PARDE
15 PsiBlast_PDB 75.1839%-134 - C1 -3OMI - ? -
9 PsiBlast_PDB 74.4838%-134 - C1 -1AR1 12.6 COX1B_PARDE
10 PsiBlast_PDB 73.9338%-134 - C1 -3HB3 12.1 COX1B_PARDE
33 Fugue 73.8039%-131 - C1 -1AR1 12.6 COX1B_PARDE