@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu38260: (2016-08-03 )
MSDEQKKPEQIHRRDILKWGAMAGAAVAIGASGLGGLAPLVQTAAKPSKKDEKEEEQIVPFYGKHQAGITTAHQTYVYFAALDVTAKDKSDIITLFRNWTSLTQMLTSGKKMSAEQRNQYLPPQDTGESADLSPSNLTVTFGFGPGFFEKDGKDRFGLKSKKPKHLAALPAMPNDNLDEKQGGGDICIQVCADDEQVAFHALRNLLNQAVGTCEVRFVNKGFLSGGKNGETPRNLFGFKDGTGNQSTKDDTLMNSIVWIQSGEPDWMTGGTYMAFRKIKMFLEVWDRSSLKDQEDTFGRRKSSGAPFGQKKETDPVKLNQIPSNSHVSLAKSTGKQILRRAFSYTEGLDPKTGYMDAGLLFISFQKNPDNQFIPMLKALSAKDALNEYTQTIGSALYACPGGCKKGEYIAQRLLES

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

HEM_A_3(4GRC)
?
[Raw transfer]



PP9_A_3(2Y4E)
EFEB_ECOLI
[Raw transfer]



HEM_A_3(2Y4F)
EFEB_ECOLI
[Raw transfer]



HEM_A_3(4GRC)
?
[Raw transfer]



HEM_B_12(2Y4F)
EFEB_ECOLI
[Raw transfer]



HEM_A_3(4GS1)
?
[Raw transfer]



HEM_A_3(5FW4)
?
[Raw transfer]



HEM_B_6(4GS1)
?
[Raw transfer]



HEM_A_3(4GS1)
?
[Raw transfer]



PG4_B_23(2Y4D)
EFEB_ECOLI
[Raw transfer]



PG4_A_10(2Y4D)
EFEB_ECOLI
[Raw transfer]
23 PsiBlast_CBE 74.5237% 4 - C6 -2Y4D 2.7 EFEB_ECOLI
1 PsiBlast_PDB 74.4844% 36 - C6 -4GRC 11.5 ?
3 PsiBlast_PDB 74.3837% 1 - C6 -2Y4D 1.6 EFEB_ECOLI
5 PsiBlast_PDB 73.7237% 11 - C6 -3O72 - EFEB_ECO57 -
2 PsiBlast_PDB 72.6437% 16 - C6 -2Y4F 11.2 EFEB_ECOLI
4 PsiBlast_PDB 72.4137% 18 - C6 -2Y4E 10.8 EFEB_ECOLI
22 PsiBlast_CBE 72.3437% 19 - C6 -2Y4E - EFEB_ECOLI -
21 PsiBlast_CBE 72.3237% 16 - C6 -2Y4F 11.2 EFEB_ECOLI
26 PsiBlast_CBE 72.1937% 18 - C6 -4GT2 - ? -
25 PsiBlast_CBE 71.7637% 15 - C6 -4GT2 - ? -
34 HHSearch 71.6538% 19 - C6 -3O72 - EFEB_ECO57 -
6 PsiBlast_PDB 71.6037% 16 - C6 -4GT2 - ? -
33 HHSearch 71.5436% 29 * C6 *4GT2 - ? -
24 PsiBlast_CBE 71.5037% 18 - C6 -4GT2 - ? -
32 HHSearch 71.3640% 39 - C6 -4GRC 11.2 ?
8 PsiBlast_PDB 68.0534% 25 - C6 -5FW4 7.2 ?
35 HHSearch 67.5134% 35 - C6 -4GS1 6.5 ?
7 PsiBlast_PDB 59.3836% 45 - C6 -4GS1 7.6 ?
27 PsiBlast_CBE 58.7936% 49 - C6 -4GS1 7.6 ?
38 HHSearch 55.9123% -68 - C6 -5DE0 - ? -