@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu38500: (2016-08-04 )
MKLLHAIQTHAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQQIQTVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLV

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_3(3FCE)
DLTA_BACCR
[Raw transfer]



ATP_A_3(3FCC)
DLTA_BACCR
[Raw transfer]



AMP_A_2(3E7X)
DLTA_BACSU
[Raw transfer]



ANP_A_3(4D4I)
?
[Raw transfer]



ANP_A_2(4D4G)
?
[Raw transfer]



GAP_A_2(4OXI)
?
[Raw transfer]



AMP_A_3(3E7W)
DLTA_BACSU
[Raw transfer]



AMP_A_3(3DHV)
DLTA_BACCR
[Raw transfer]



AMP_A_3(3E7W)
DLTA_BACSU
[Raw transfer]



AMP_A_9(1AMU)
GRSA_ANEMI
[Raw transfer]
2 PsiBlast_PDB 99.59100%-110 - C2 -3E7X 6.7 DLTA_BACSU
1 PsiBlast_PDB 98.95100%-109 - C2 -3E7W 6.8 DLTA_BACSU
31 HHSearch 98.38100%-109 - C2 -3E7W 6.8 DLTA_BACSU
5 PsiBlast_PDB 78.4756% -35 - C2 -3DHV 5.1 DLTA_BACCR
3 PsiBlast_PDB 78.4656% -33 - C2 -3FCC 6.9 DLTA_BACCR
4 PsiBlast_PDB 78.0856% -35 - C2 -3FCE 6.9 DLTA_BACCR
6 PsiBlast_PDB 74.9956% -41 - C2 -4PZP - DLTA_BACCR -
39 HHSearch 71.3856% -13 - C2 -4PZP - DLTA_BACCR -
22 PsiBlast_CBE 69.1842% -12 - C2 -3LGX - DLTA_STRP1 -
8 PsiBlast_PDB 68.9042% -15 - C2 -3LGX - DLTA_STRP1 -
23 PsiBlast_CBE 68.2142% -13 - C2 -3LGX - DLTA_STRP1 -
7 PsiBlast_PDB 68.1642% -18 - C2 -3L8C - DLTA_STRP6 -
21 PsiBlast_CBE 67.6942% -15 - C2 -3LGX - DLTA_STRP1 -
37 HHSearch 60.6329% -28 - C2 -4ZXH - ? -
38 HHSearch 60.5527% -31 - C2 -4OXI - ? -
48 Fugue 60.0223% -9 - C2 -4DG9 - ? -
9 PsiBlast_PDB 59.0130% -9 - C2 -2VSQ - -
47 HHSearch 58.4324% -32 - C2 -4DG8 - ? -
46 HHSearch 58.3018% -14 - C2 -4WV3 - ? -
34 HHSearch 57.7029% 3 - C2 -2VSQ - -
10 PsiBlast_PDB 56.0930% 8 - C2 -1AMU 6.2 GRSA_ANEMI
26 PsiBlast_CBE 50.9531% -46 - C2 -4OXI 7.0 ?