@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu38730: (2016-08-04 )
MKKEEWILPYIKQNARLFVLVIFLGAVTIFSAAFLMFTSGFLISKAATRPENILLIYVPIVAVRTFGIARSVSRYVERLVGHHIILKIVSDMRVRLYNMLEPGALMLRSRFRTGDMLGILSEDIEHLQDAFLKTIFPAISALLLYAVSVIALGFFSWPFAILLALYLFVLVVLFPVVSLLVTRAKNAKLKSGRNVLYSRLTDAVMGVSDWMFSGRRHAFIDAYEKEERDWFELERKKQRFTRWRDFAAQCLVAGLILLMLFWTAGQQADGELAKTMIAAFVLVVFPLTEAFLPLSDALGEVPGYQDSIRRMNNVAPQPEASQTESGDQILDLQDVTLAFRDVTFSYDNSSQVLHNFSFTLRQGEKMALLGRSGSGKSTSLALIEGALKPDSGSVTLNGVETALLKDQIADAVAVLNQKPHLFDTSILNNIRLGNGEASDEDVRRAAKQVKLHDYIESLPDGYHTSVQETGIRFSGGERQRIALARILLQDTPIIILDEPTVGLDPITERELMETVFEVLKGKTILWITHHLAGVEAADKIVFLENGKTEMEGTHEELLAANERYRRLYHLDVPVK

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_C_9(1MV5)
LMRA_LACLA
[Raw transfer]




ADP_B_8(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_C_9(1MV5)
LMRA_LACLA
[Raw transfer]




7 PsiBlast_PDB 83.6527% - - C2 -3B5W - MSBA_ECOLI -
2 PsiBlast_PDB 83.4928% - - C2 -3B5Z - MSBA_SALTY -
1 PsiBlast_PDB 83.4628% - - C2 -3B5Y - MSBA_SALTY -
97 HHSearch 82.2121% -63 - C2 -4Q4H - Y288_THEMA -
100 HHSearch 78.5222% -36 - C2 -4Q4H - ? -
5 PsiBlast_PDB 75.3427% -32 - C2 -2ONJ - Y1866_STAAM -
4 PsiBlast_PDB 74.9527% -30 - C2 -2HYD - Y1866_STAAM -
11 PsiBlast_PDB 74.9027% -14 - C2 -4Q4A - ? -
112 Fugue 74.6124% -56 - C2 -3B60 - MSBA_SALTY -
10 PsiBlast_PDB 74.5227% -17 - C2 -3QF4 - ? -
6 PsiBlast_PDB 74.3027% -32 - C2 -4A82 - Y1866_STAAM -
9 PsiBlast_PDB 73.5728% - - C2 -3B5X - MSBA_VIBCH -
12 PsiBlast_PDB 73.5327% -17 - C2 -4Q4H - ? -
8 PsiBlast_PDB 72.0827% -6 - C2 -4Q4J - ? -
96 HHSearch 71.7523% -6 - C2 -4A82 - Y1866_STAAM -
98 HHSearch 70.1822% -36 - C2 -4MRS - ATM1_NOVAD -
94 HHSearch 70.0623% - - C2 -3B5X - MSBA_VIBCH -
93 HHSearch 69.5424% -32 - C2 -3B60 - MSBA_SALTY -
57 PsiBlast_CBE 68.7135% -65 - C2 -3NH9 - -
101 HHSearch 68.6821% -32 - C2 -3WMG - ? -
73 PsiBlast_CBE 54.3933% -26 - C2 -1MV5 5.4 LMRA_LACLA
74 PsiBlast_CBE 49.5333% -18 - C2 -1MV5 6.2 LMRA_LACLA