@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu39260: (2016-08-05 )
MSSNEKRFPEGFLWGGAVAANQVEGAYNEGGKGLSTADVSPNGIMSPFDESMTSLNLYHNGIDFYHRYKEDIALFAEMGFKAFRTSIAWTRIFPNGDEEEPNEEGLRFYDDLFDELLKHHIEPVVTISHYEMPLGLVKNYGGWKNRKVIEFYERYAKTVFKRYQHKVKYWMTFNEINVVLHAPFTGGGLVFEEGENKLNAMYQAAHHQFVASALAVKAGHDIIPDSKIGCMIAATTTYPMTSKPEDVFAAMENERKTLFFSDVQARGAYPGYMKRYLAENNIEIEMAEGDEELLKEHTVDYIGFSYYMSMAASTDPEELAKSGGNLLGGVKNPYLKSSEWGWQIDPKGLRITLNTLYDRYQKPLFIVENGLGAVDKVEEDGTIQDDYRINYLRDHLIEAREAIADGVELIGYTSWGPIDLVSASTAEMKKRYGFIYVDRDNEGNGTFNRIKKKSFNWYQQVIATNGESL

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

6GB_A_3(4GPN)
?
[Raw transfer]




BG6_B_7(4F66)
?
[Raw transfer]




BG6_A_3(4F66)
?
[Raw transfer]




P53_A_2(4F79)
?
[Raw transfer]




BG6_A_3(4F66)
?
[Raw transfer]




1FT_B_3(4IPN)
?
[Raw transfer]




6GB_B_5(4GPN)
?
[Raw transfer]




BGP_B_4(4PBG)
LACG_LACLL
[Raw transfer]




BGP_A_3(4PBG)
LACG_LACLL
[Raw transfer]




1FT_E_4(4IPN)
?
[Raw transfer]




GOL_A_3(4IPL)
?
[Raw transfer]




GOL_A_3(4IPL)
?
[Raw transfer]




YLL_B_6(2JAL)
BGLA_THEMA
[Raw transfer]




BGC_A_2(3QOM)
?
[Raw transfer]




BGC_A_2(3QOM)
?
[Raw transfer]




2 PsiBlast_PDB 98.0359% -69 - C1 -4IPN 4.1 ?
106 HHSearch 97.8760% -66 - C1 -4IPL 2.7 ?
21 PsiBlast_CBE 97.6759% -65 - C1 -4IPN 2.2 ?
1 PsiBlast_PDB 97.4159% -66 - C1 -4IPL 2.7 ?
7 PsiBlast_PDB 76.1653% 30 - C1 -3PN8 - ? -
35 PsiBlast_CBE 76.1331% -51 - C1 -1TR1 - BGLA_PAEPO -
25 PsiBlast_CBE 75.6254% 29 - C1 -4F66 5.1 ?
5 PsiBlast_PDB 75.0654% 28 - C1 -4F79 5.1 ?
23 PsiBlast_CBE 74.9656% 35 - C1 -2XHY - BGLA_ECOLI -
34 PsiBlast_CBE 74.8931% -51 - C1 -1TR1 - BGLA_PAEPO -
14 PsiBlast_PDB 74.8631% -51 - C1 -1E4I - BGLA_PAEPO -
22 PsiBlast_CBE 74.8556% 35 - C1 -2XHY - BGLA_ECOLI -
15 PsiBlast_PDB 74.8531% -51 - C1 -1TR1 - BGLA_PAEPO -
102 HHSearch 74.8256% 22 - C1 -3QOM 2.7 ?
10 PsiBlast_PDB 74.7132% -53 - C1 -1UYQ - BGLA_PAEPO -
108 HHSearch 74.6356% 35 - C1 -2XHY - BGLA_ECOLI -
26 PsiBlast_CBE 74.5054% 28 - C1 -4GPN 5.8 ?
33 PsiBlast_CBE 74.4531% -51 - C1 -1TR1 - BGLA_PAEPO -
87 PsiBlast_CBE 74.3432% -39 - C1 -4HZ7 - ? -
86 PsiBlast_CBE 74.3432% -40 - C1 -4HZ8 - ? -
6 PsiBlast_PDB 74.3254% 27 - C1 -4GPN 4.2 ?
8 PsiBlast_PDB 73.7754% 30 - C1 -3QOM 2.7 ?
4 PsiBlast_PDB 73.6754% 30 - C1 -4F66 5.6 ?
104 HHSearch 70.9155% 37 - C1 -4F66 5.6 ?
93 PsiBlast_CBE 63.8734% 14 - C1 -4PBG 4.7 LACG_LACLL
94 PsiBlast_CBE 62.9234% 16 - C1 -4PBG 4.9 LACG_LACLL
54 PsiBlast_CBE 62.1034% 21 - C1 -2JAL 3.2 BGLA_THEMA