@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu39400: (2016-08-05 )
MRMVDIIIKKQNGKELTTEEIQFFVNGYTDGSIPDYQASALAMAIFFQDMSDRERADLTMAMVNSGETIDLSAIEGIKVDKHSTGGVGDTTTLVLAPLVAALDVPVAKMSGRGLGHTGGTIDKLEAIMGFHVELTKDEFIKLVNRDKVAVIGQSGNLTPADKKLYALRDVTGTVNSIPLIASSIMSKKIAAGADAIVLDVKTGAGAFMKTEEDAAELAKAMVRIGNNVGRQTMAVISDMSQPLGFAIGNALEVKEAIDTLKGEGPEDLHELVLTLGSQMVVLAKKADTLDEARAKLEEVMKNGKALEKFKDFLKNQGGDSSIVDDPSKLPQAAYQIDVPAKEAGVVSEIVADEIGVAAMLLGAGRATKEDEIDLAVGIMLRKKVGDKVEKGEPLVTLYANRENVDEVIAKVYDNIRIAAEAKAPKLIHTLITE

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

URA_B_7(1BRW)
PDP_GEOSE
[Raw transfer]




IUR_A_3(2WK6)
TYPH_HUMAN
[Raw transfer]




IUR_B_4(2WK6)
TYPH_HUMAN
[Raw transfer]




THM_B_20(4YEK)
?
[Raw transfer]




URI_B_6(4YYY)
?
[Raw transfer]




CMU_A_2(1UOU)
TYPH_HUMAN
[Raw transfer]




CMU_A_2(1UOU)
TYPH_HUMAN
[Raw transfer]




THM_A_9(4YEK)
?
[Raw transfer]




THM_A_2(3H5Q)
PDP_STAAC
[Raw transfer]




0NP_A_2(4EAD)
TYPH_ECOLI
[Raw transfer]




0NP_A_2(4EAD)
TYPH_ECOLI
[Raw transfer]




CIT_A_4(4YYY)
?
[Raw transfer]




CIT_A_3(4YYY)
?
[Raw transfer]




1 PsiBlast_PDB 84.9371% -78 - C9 -3H5Q - PDP_STAAC -
21 PsiBlast_CBE 82.6868% -79 - C9 -1BRW - PDP_GEOSE -
2 PsiBlast_PDB 81.8968% -80 - C9 -1BRW 2.6 PDP_GEOSE
39 HHSearch 78.4573% 16 - C9 -3H5Q 4.0 PDP_STAAC
37 HHSearch 78.0467% -20 - C9 -1BRW - PDP_GEOSE -
3 PsiBlast_PDB 72.2047% -63 - C9 -2DSJ - ? -
22 PsiBlast_CBE 72.0947% -68 - C9 -2DSJ - ? -
34 HHSearch 70.7447% -41 - C9 -2DSJ - ? -
36 HHSearch 67.0644% 14 - C9 -4EAD 4.7 TYPH_ECOLI
30 PsiBlast_CBE 66.1439% -54 - C9 -2WK5 - TYPH_HUMAN -
6 PsiBlast_PDB 66.0546% - - C9 -1TPT - TYPH_ECOLI -
35 HHSearch 66.0038% -19 - C9 -1UOU 4.8 TYPH_HUMAN
10 PsiBlast_PDB 64.7246% 9 - C9 -4LHM - TYPH_ECOLI -
18 PsiBlast_PDB 64.3939% -18 - C9 -1UOU 4.8 TYPH_HUMAN
8 PsiBlast_PDB 64.3846% 10 - C9 -4EAD 4.7 TYPH_ECOLI
5 PsiBlast_PDB 64.3346% 8 - C9 -1OTP - TYPH_ECOLI -
25 PsiBlast_CBE 64.3245% 5 - C9 -4XR5 - TYPH_SALTY -
13 PsiBlast_PDB 64.3245% 7 - C9 -4YEK 4.2 ?
26 PsiBlast_CBE 64.1945% 9 - C9 -4X46 - TYPH_SALTY -
29 PsiBlast_CBE 64.1839% -12 - C9 -2WK6 3.2 TYPH_HUMAN
14 PsiBlast_PDB 63.9845% 5 - C9 -4YYY 3.5 ?
17 PsiBlast_PDB 63.6139% -11 - C9 -2WK6 3.5 TYPH_HUMAN
23 PsiBlast_CBE 63.4345% 4 - C9 -4YYY 3.4 ?
24 PsiBlast_CBE 63.2445% 10 - C9 -4YEK 4.0 ?