@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu39430: (2016-08-05 )
MDREKQQLSIEAARLYYQSDYSQQQIAEQLNISRPTVSRLLQYAKEKGYVQIRVMDPFEDLDALGSILEEKYGLLEAHVVFSPTPDYAGITHDLSRYGAEYMHETVKDGDIVGVSWGTTMYQIAQNMQPKQVKGVEVVQLKGGISHSRVNTYSAETIQLFAEAFQTMPRYLPLPVVFDNADVKRMVEKDRHIERIIEMGKQANIALFTVGTVRDEALLFRLGYFNEEEKALLKKQAVGDICSRFFDAKGNICSSAINDRTIGVELQDLRLKERSILVAGGSRKVSSIHGALTGKYANVLIIDQHTARALVNDL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BCN_B_4(4OQQ)
DEOR_BACSU
[Raw transfer]




BCN_A_3(4OQQ)
DEOR_BACSU
[Raw transfer]




PED_A_2(4OQP)
DEOR_BACSU
[Raw transfer]




PED_A_2(4OQP)
DEOR_BACSU
[Raw transfer]




21 PsiBlast_CBE 99.33100%-112 - C2 -4OQQ 2.9 DEOR_BACSU
2 PsiBlast_PDB 98.67100%-112 - C2 -4OQQ 2.9 DEOR_BACSU
37 HHSearch 98.19100%-113 - C2 -4OQP 3.6 DEOR_BACSU
1 PsiBlast_PDB 97.87100%-111 - C2 -4OQP 3.6 DEOR_BACSU
7 PsiBlast_PDB 68.3426% -38 - C2 -4L5J - LSRR_ECOLI -
34 HHSearch 67.5125% -39 - C2 -4L5J - LSRR_ECOLI -
22 PsiBlast_CBE 66.4531% -35 - C2 -2W48 - SORC_KLEPN -
23 Fugue 65.5528% -42 - C2 -2W48 - SORC_KLEPN -
33 HHSearch 65.0529% -44 - C2 -2W48 - SORC_KLEPN -
6 PsiBlast_PDB 64.7526% -39 - C2 -4L5I - LSRR_ECOLI -
3 PsiBlast_PDB 63.7731% -37 - C2 -2W48 - SORC_KLEPN -
35 HHSearch 62.9526% -74 - C- -4R9N - ? -
5 PsiBlast_PDB 62.6929% -19 - C2 -3NZE - ? -
9 PsiBlast_PDB 62.0526% -78 - C- -4R9N - ? -
39 HHSearch 61.8629% -22 - C2 -3NZE - ? -
38 HHSearch 61.0823% -62 - C2 -3KV1 - ? -
4 PsiBlast_PDB 60.7127% -38 - C2 -4GO1 - LSRR_ECOLI -
40 HHSearch 59.8727% -8 * C2 *2GNP - ? -
13 PsiBlast_PDB 59.3426% -24 - C2 -4L50 - LSRR_ECOLI -
36 HHSearch 58.3327% -27 - C2 -3EFB - ? -