@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu40400: (2016-08-07 )
MNKVGFFRSIQFKITLIYVLLIIIAMQIIGVYFVNQVEKSLISSYEQSLNQRIDNLSYYIEQEYKSDNDSTVIKDDVSRILNDFTKSDEVREISFVDKSYEVVGSSKPYGEEVAGKQTTDLIFKRIFSTKQSYLRKYYDPKSKIRVLISAKPVMTENQEVVGAIYVVASMEDVFNQMKTINTILASGTGLALVLTALLGIFLARTITHPLSDMRKQAMELAKGNFSRKVKKYGHDEIGQLATTFNHLTRELEDAQAMTEGERRKLASVIAYMTDGVIATNRNGAIILLNSPALELLNVSRETALEMPITSLLGLQENYTFEDLVEQQDSMLLEIERDDELTVLRVNFSVIQREHGKIDGLIAVIYDVTEQEKMDQERREFVANVSHELRTPLTTMRSYLEALAEGAWENKDIAPRFLMVTQNETERMIRLVNDLLQLSKFDSKDYQFNREWIQIVRFMSLIIDRFEMTKEQHVEFIRNLPDRDLYVEIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSIEGKGTTITFTLPYKEEQEDDWDEA

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_4(3SL2)

[Raw transfer]




ANP_A_3(4BIW)
CPXA_ECOLI
[Raw transfer]




ATP_A_4(3SL2)

[Raw transfer]




ANP_B_7(4BIW)
CPXA_ECOLI
[Raw transfer]




ATP_A_3(4CB0)
CPXA_ECOLI
[Raw transfer]




ATP_A_3(4BIV)
CPXA_ECOLI
[Raw transfer]




AN2_A_3(4U7O)
?
[Raw transfer]




AN2_B_4(4U7O)
?
[Raw transfer]




AN2_A_3(4U7O)
?
[Raw transfer]




ADP_A_5(4BIY)
CPXA_ECOLI
[Raw transfer]




ADP_C_8(4BIY)
CPXA_ECOLI
[Raw transfer]




ADP_A_2(4JAU)
?
[Raw transfer]




ADP_A_3(4BIX)
CPXA_ECOLI
[Raw transfer]




87 Fugue 72.9446% -15 - C4 -4I5S - ? -
1 PsiBlast_PDB 70.8645% 4 - C4 -4I5S - ? -
97 HHSearch 69.9143% 3 - C4 -4I5S - ? -
2 PsiBlast_PDB 67.52100%-141 - C3 -3SL2 7.8
117 HHSearch 66.50100%-138 - C3 -3SL2 7.8
101 HHSearch 64.0053% 33 - C3 -4U7O 9.2 ?
4 PsiBlast_PDB 63.3053% 44 - C3 -4U7O 9.2 ?
3 PsiBlast_PDB 55.2153% 22 - C3 -4U7N - ? -
21 PsiBlast_CBE 54.5153% 44 - C3 -4U7O 9.7 ?
20 PsiBlast_PDB 50.5241%-224 - C2 -4MN6 - WALK_STAAU -
98 HHSearch 50.4825% -18 - C4 -3A0R - ? -
8 PsiBlast_PDB 48.6634% 50 - C3 -4JAS - ? -
6 PsiBlast_PDB 48.5835% 48 - C3 -4JAV - ? -
23 PsiBlast_CBE 47.9835% 62 - C3 -3DGE - ? -
107 HHSearch 47.3330% 4 - C3 -4Q20 - DIVL_CAUCR -
9 PsiBlast_PDB 47.2134% 35 - C3 -4JAU 6.6 ?
10 PsiBlast_PDB 46.9732% 17 - C3 -4BIW 8.1 CPXA_ECOLI
12 PsiBlast_PDB 46.8132% 14 - C3 -4BIY 6.4 CPXA_ECOLI
25 PsiBlast_CBE 46.7332% 20 - C3 -4BIY 6.3 CPXA_ECOLI
16 PsiBlast_PDB 46.6532% 19 - C3 -4CB0 6.6 CPXA_ECOLI
11 PsiBlast_PDB 46.2032% 15 - C3 -4BIX 5.8 CPXA_ECOLI
28 PsiBlast_CBE 45.7832% 18 - C3 -4BIW 7.7 CPXA_ECOLI
15 PsiBlast_PDB 45.2632% 17 - C3 -4BIV 6.1 CPXA_ECOLI