@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu41010: (2016-08-08 )
MGYEAGQYDVIVIGAGHAGVEAALASARQGAKTLVLTINLDMVAFMPCNPSVGGPAKGIVVREIDALGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFQYQHEMKNTLEKEPNLTLLQGIVERLIVEDGECRGVITQTGAHYRAKAVVMTTGTYLRGRIILGDLSYSSGPNNQQPSIKLSEHLEELGFDLVRFKTGTPPRVKSDTIDYSKTEIQPGDDVPRAFSYETVEYITDQLPCWLTYTSPETHEIIDSNLHRSPMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFLEPEGRNTQEVYVQGLSTSLPEDVQQRMLATIPGLENVQMMRAGYAIEYDAIVPTQLWPTLETKKITNLYTAGQINGTSGYEEAAGQGIMAGINAGRKALGKEEVILSRSDAYIGVLIDDLVTKGTNEPYRLLTSRAEYRLLLRHDNADLRLTEIGHRIGLISDERYAAFEKKKAAIEAEKKRLHSVIIKPSPENQEYIRSLGGSELKDGVRGTDLMKRPEMNYETVTKLAPPEVPVPQDVAEQVEIQVKYEGYIEKSLQQVEKLKKMENKKIPDRIDYDAIKGIATEARQKLKNVRPLSVAQASRISGVNPADISILLVYLEQGRIAKIAE

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_A_3(2ZXH)
MNMG_AQUAE
[Raw transfer]




FAD_B_4(2ZXH)
MNMG_AQUAE
[Raw transfer]




24 PsiBlast_CBE 70.3852% -1 - C6 -2ZXH 11.0 MNMG_AQUAE
3 PsiBlast_PDB 70.0952% -2 - C6 -2ZXH 11.5 MNMG_AQUAE
23 PsiBlast_CBE 69.8752% -6 - C6 -2ZXI - MNMG_AQUAE -
22 PsiBlast_CBE 69.7052% -9 - C6 -2ZXI - MNMG_AQUAE -
21 PsiBlast_CBE 69.6052% -7 - C6 -2ZXI - MNMG_AQUAE -
4 PsiBlast_PDB 68.7548% 8 - C6 -3CP8 - MNMG_CHLTE -
118 HHSearch 68.7248% 7 - C6 -3CP8 - MNMG_CHLTE -
27 PsiBlast_CBE 68.6548% 8 - C6 -3CP8 - MNMG_CHLTE -
26 PsiBlast_CBE 67.9748% 9 - C6 -3CP8 - MNMG_CHLTE -
25 PsiBlast_CBE 63.4048% 10 - C6 -3CP8 - MNMG_CHLTE -
28 PsiBlast_CBE 61.9553% -13 - C6 -3G05 - MNMG_ECO57 -
5 PsiBlast_PDB 60.6453% -11 - C6 -3G05 - MNMG_ECO57 -
2 PsiBlast_PDB 58.9352% -12 - C- -3CES - MNMG_ECOLI -
1 PsiBlast_PDB 58.4052% -10 - C6 -3CP2 - MNMG_ECOLI -
116 HHSearch 56.2651% 27 - C- -3CES - MNMG_ECOLI -
67 PsiBlast_CBE 41.0458%-283 - C6 -2YWL - ? -
68 PsiBlast_CBE 40.8658%-276 - C6 -2CVJ - ? -
66 PsiBlast_CBE 40.5158%-272 - C6 -2YWL - ? -
101 PsiBlast_CBE 36.7550%-222 - C6 -1NHP - NAPE_ENTFA -
99 PsiBlast_CBE 36.6050%-221 - C6 -1NHS - NAPE_ENTFA -