@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv0001: (2016-04-18 )
MTDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGFALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSENPATTSPDTTTDNDEIDDSAAARGDNQHSWPSYFTERPHNTDSATAGVTSLNRRYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAERREVFDHVKELTTRIRQRSKR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_A_7(2Z4R)
DNAA_THEMA
[Raw transfer]




ADP_C_9(2Z4R)
DNAA_THEMA
[Raw transfer]




ADP_B_8(2Z4R)
DNAA_THEMA
[Raw transfer]




ADP_A_3(2Z4S)
DNAA_THEMA
[Raw transfer]




ADP_A_3(2Z4S)
DNAA_THEMA
[Raw transfer]




ADP_A_3(1L8Q)
DNAA_AQUAE
[Raw transfer]




ADP_A_3(1L8Q)
DNAA_AQUAE
[Raw transfer]




18 PsiBlast_CBE 93.2536% -87 - C5 -3R8F - DNAA_AQUAE -
19 PsiBlast_CBE 92.7336% -86 - C5 -3R8F - DNAA_AQUAE -
3 PsiBlast_PDB 92.5936% -86 - C5 -3R8F - DNAA_AQUAE -
20 PsiBlast_CBE 92.5336% -86 - C5 -3R8F - DNAA_AQUAE -
37 HHSearch 92.4735% -90 - C5 -1L8Q 7.9 DNAA_AQUAE
23 PsiBlast_CBE 91.0636% -85 - C5 -2HCB - DNAA_AQUAE -
5 PsiBlast_PDB 90.4935% -90 - C5 -1L8Q 7.9 DNAA_AQUAE
4 PsiBlast_PDB 90.4936% -88 - C5 -2HCB - DNAA_AQUAE -
21 PsiBlast_CBE 90.2636% -83 - C5 -2HCB - DNAA_AQUAE -
22 PsiBlast_CBE 88.4136% -84 - C5 -2HCB - DNAA_AQUAE -
16 PsiBlast_CBE 85.3639% -93 - C5 -2Z4R 7.2 DNAA_THEMA
17 PsiBlast_CBE 85.1939% -94 - C5 -2Z4R 7.5 DNAA_THEMA
1 PsiBlast_PDB 85.1839% -94 - C5 -2Z4R 7.2 DNAA_THEMA
2 PsiBlast_PDB 83.9539% -91 - C5 -2Z4S 7.0 DNAA_THEMA
36 HHSearch 79.9532% -92 - C5 -2Z4S 7.0 DNAA_THEMA
6 PsiBlast_PDB 70.14100% -93 - C4 -3PVP - DNAA_MYCTA -
7 PsiBlast_PDB 69.44100% -86 - C4 -3PVV - DNAA_MYCTA -
24 PsiBlast_CBE 69.27100% -99 - C4 -3PVV - -
42 HHSearch 69.0598% -86 * C4 *3PVV - DNAA_MYCTA -
25 PsiBlast_CBE 68.92100% -96 - C4 -3PVP - -