@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv0006: (2016-04-18 )
MTDTTLPPDDSLDRIEPVDIEQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQGTADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLDQLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEESGDDNAVDANGADQTGN

Atome Classification :

(62 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_E_5(3RAD)
PARC_STRPN
[Raw transfer]

-

GOL_B_8(3ILW)
GYRA_MYCTU
[Raw transfer]




GOL_A_4(3ILW)
GYRA_MYCTU
[Raw transfer]




GOL_A_4(3ILW)
GYRA_MYCTU
[Raw transfer]




NACID_H_8(3LTN)
PARC_STRPN
[Raw transfer]

-

NACID_H_8(3RAE)
PARC_STRPN
[Raw transfer]

-

NACID_H_8(3RAF)
PARC_STRPN
[Raw transfer]

-

SM8_A_5(2Y3P)
GYRA_ECOLI
[Raw transfer]




CHAIN_H_8(4KOE)
PARC_STRPN
[Raw transfer]

-

CHAIN_H_8(4KPE)
PARC_STRPN
[Raw transfer]

-

NACID_H_8(5CDP)
GYRA_STAAN
[Raw transfer]

-

SM8_B_8(2Y3P)
GYRA_ECOLI
[Raw transfer]




NACID_H_8(3K9F)
PARC_STRPN
[Raw transfer]

-

MPD_B_5(3IFZ)
GYRA_MYCTU
[Raw transfer]




NACID_H_8(3RAD)
PARC_STRPN
[Raw transfer]

-

MPD_A_3(3IFZ)
GYRA_MYCTU
[Raw transfer]




CHAIN_H_8(4KPF)
PARC_STRPN
[Raw transfer]

-

NACID_H_8(3KSA)
PARC_STRPN
[Raw transfer]

-

NACID_F_6(3RAF)
PARC_STRPN
[Raw transfer]

-

NACID_G_6(5CDP)
GYRA_STAAN
[Raw transfer]

-

NACID_F_6(3K9F)
PARC_STRPN
[Raw transfer]

-

NACID_F_4(2XCR)
GYRA_STAAN
[Raw transfer]

-

NACID_F_4(2XCR)
GYRA_STAAN
[Raw transfer]

-

NACID_F_6(3RAD)
PARC_STRPN
[Raw transfer]

-

NACID_E_3(4BUL)
GYRA_STAAN
[Raw transfer]

-

NACID_P_16(5CDN)
GYRA_STAAN
[Raw transfer]

-

NACID_F_6(3LTN)
PARC_STRPN
[Raw transfer]

-

NACID_N_14(5CDN)
GYRA_STAAN
[Raw transfer]

-

NACID_F_7(5CDR)
GYRA_STAAN
[Raw transfer]

-

NACID_F_7(5CDR)
GYRA_STAAN
[Raw transfer]

-

NACID_W_8(2XCR)
GYRA_STAAN
[Raw transfer]

-

NACID_E_5(3KSB)
PARC_STRPN
[Raw transfer]

-

NACID_G_6(5CDN)
GYRA_STAAN
[Raw transfer]

-

NACID_W_8(2XCR)
GYRA_STAAN
[Raw transfer]

-

NACID_O_8(5CDN)
GYRA_STAAN
[Raw transfer]

-

NACID_E_5(3KSB)
PARC_STRPN
[Raw transfer]

-

NACID_F_6(3KSA)
PARC_STRPN
[Raw transfer]

-

NACID_W_12(5CDQ)
GYRA_STAAN
[Raw transfer]

-

NACID_W_12(5CDQ)
GYRA_STAAN
[Raw transfer]

-

NACID_F_6(5CDQ)
GYRA_STAAN
[Raw transfer]

-

NACID_F_6(5CDQ)
GYRA_STAAN
[Raw transfer]

-

NACID_F_6(5CDO)
GYRA_STAAN
[Raw transfer]

-

NACID_I_6(5CDM)
GYRA_STAAN
[Raw transfer]

-

NACID_W_12(5CDO)
GYRA_STAAN
[Raw transfer]

-

NACID_W_12(5CDO)
GYRA_STAAN
[Raw transfer]

-

10 PsiBlast_PDB 91.1199% 0 - C- -5BTN - ? -
9 PsiBlast_PDB 91.1199% 0 - C- -5BTI - ? -
8 PsiBlast_PDB 91.1199% 0 - C- -5BTF - ? -
7 PsiBlast_PDB 91.1199% 0 - C- -5BTC - ? -
6 PsiBlast_PDB 91.1199% 0 - C- -5BTA - ? -
5 PsiBlast_PDB 91.1199% 0 - C- -5BTL - ? -
4 PsiBlast_PDB 91.1199% 0 - C- -5BTG - ? -
3 PsiBlast_PDB 91.1199% 0 - C- -5BTD - ? -
2 PsiBlast_PDB 91.1199% 0 - C- -5BS8 - ? -
30 PsiBlast_CBE 90.2199% -97 - C5 -5BTA - ? -
25 PsiBlast_CBE 90.2099% -98 - C5 -5BS8 - ? -
24 PsiBlast_CBE 90.1199% -97 - C5 -5BTD - ? -
26 PsiBlast_CBE 90.0999% -96 - C5 -5BTN - ? -
28 PsiBlast_CBE 90.0699% -97 - C5 -5BTF - ? -
23 PsiBlast_CBE 89.9199% -97 - C5 -5BTG - ? -
22 PsiBlast_CBE 89.8999% -97 - C5 -5BTL - ? -
29 PsiBlast_CBE 89.8199% -95 - C5 -5BTC - ? -
27 PsiBlast_CBE 89.7899% -96 - C5 -5BTI - ? -
1 PsiBlast_PDB 89.1699% -96 - C5 -3IFZ 3.0 GYRA_MYCTU
21 PsiBlast_CBE 89.1099% -96 - C5 -3IFZ 3.2 GYRA_MYCTU
31 PsiBlast_CBE 89.09100% -94 - C5 -3ILW 2.4 GYRA_MYCTU
11 PsiBlast_PDB 88.66100% -97 - C5 -3ILW 2.8 GYRA_MYCTU
93 HHSearch 88.54100% -97 - C5 -3ILW 2.8 GYRA_MYCTU
17 PsiBlast_PDB 80.0656% -91 - C5 -5CDP 4.8 GYRA_STAAN
44 PsiBlast_CBE 79.9856% -92 - C5 -5CDQ 5.6 GYRA_STAAN
38 PsiBlast_CBE 79.9556% -92 - C5 -5CDP 6.1 GYRA_STAAN
18 PsiBlast_PDB 79.8656% -91 - C5 -5CDR 4.8 GYRA_STAAN
16 PsiBlast_PDB 79.8556% -91 - C5 -4BUL 5.7 GYRA_STAAN
37 PsiBlast_CBE 79.8156% -91 - C5 -5CDR 4.9 GYRA_STAAN
43 PsiBlast_CBE 79.5256% -88 - C5 -5CDQ 5.4 GYRA_STAAN
47 PsiBlast_CBE 79.2956% -89 - C5 -5CDN 4.8 GYRA_STAAN
39 PsiBlast_CBE 79.0956% -92 - C5 -5CDO 5.4 GYRA_STAAN
41 PsiBlast_CBE 78.9156% -90 - C5 -5CDO 5.7 GYRA_STAAN
48 PsiBlast_CBE 78.8756% -90 - C5 -5CDN 4.7 GYRA_STAAN
42 PsiBlast_CBE 78.8356% -90 - C5 -5CDM 4.9 GYRA_STAAN
40 PsiBlast_CBE 78.6956% -92 - C5 -5CDO 5.1 GYRA_STAAN
35 PsiBlast_CBE 78.3856% -88 - C5 -2XCR 4.5 GYRA_STAAN (first)
34 PsiBlast_CBE 78.1156% -92 - C5 -2XCR 4.1 GYRA_STAAN (first)
15 PsiBlast_PDB 78.0356% -90 - C5 -2XCR 4.4 GYRA_STAAN (first)
36 PsiBlast_CBE 77.8856% -86 - C5 -2XCR 5.4 GYRA_STAAN (first)
53 PsiBlast_CBE 77.6747% -85 - C5 -2Y3P 4.6 GYRA_ECOLI (first)
52 PsiBlast_CBE 77.5747% -88 - C5 -2Y3P 4.2 GYRA_ECOLI (first)
68 PsiBlast_CBE 77.0842% -88 - C5 -3LTN 3.7 PARC_STRPN
72 PsiBlast_CBE 77.0342% -91 - C5 -3KSA 4.5 PARC_STRPN
67 PsiBlast_CBE 77.0242% -88 - C5 -3LTN 3.4 PARC_STRPN
71 PsiBlast_CBE 76.8842% -91 - C5 -3KSA 4.0 PARC_STRPN
74 PsiBlast_CBE 76.7842% -84 - C5 -3K9F 2.9 PARC_STRPN
73 PsiBlast_CBE 76.6742% -84 - C5 -3K9F 3.8 PARC_STRPN
59 PsiBlast_CBE 76.5442% -89 - C5 -4KOE 4.4 PARC_STRPN
70 PsiBlast_CBE 76.4242% -89 - C5 -3KSB 4.1 PARC_STRPN
69 PsiBlast_CBE 76.3742% -89 - C5 -3KSB 4.6 PARC_STRPN
62 PsiBlast_CBE 76.3542% -85 - C5 -3RAF 4.1 PARC_STRPN
66 PsiBlast_CBE 76.3042% -85 - C5 -3RAD 4.5 PARC_STRPN
63 PsiBlast_CBE 75.9442% -86 - C5 -3RAE 2.9 PARC_STRPN
65 PsiBlast_CBE 75.8042% -91 - C5 -3RAD 3.5 PARC_STRPN
61 PsiBlast_CBE 75.7042% -88 - C5 -3RAF 3.8 PARC_STRPN
55 PsiBlast_CBE 75.6042% -88 - C5 -4KPF 4.2 PARC_STRPN
57 PsiBlast_CBE 75.5442% -88 - C5 -4KPE 3.9 PARC_STRPN
46 PsiBlast_CBE 65.3356% -4 - C5 -5CDQ 5.6 GYRA_STAAN
50 PsiBlast_CBE 64.7056% -3 - C5 -5CDN Error GYRA_STAAN (first)
45 PsiBlast_CBE 64.6256% -5 - C5 -5CDQ Error GYRA_STAAN
49 PsiBlast_CBE 64.6056% -4 - C5 -5CDN Error GYRA_STAAN (first)