@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv0016c: (2016-04-18 )
MNASLRRISVTVMALIVLLLLNATMTQVFTADGLRADPRNQRVLLDEYSRQRGQITAGGQLLAYSVATDGRFRFLRVYPNPEVYAPVTGFYSLRYSSTALERAEDPILNGSDRRLFGRRLADFFTGRDPRGGNVDTTINPRIQQAGWDAMQQGCYGPCKGAVVALEPSTGKILALVSSPSYDPNLLASHNPEVQAQAWQRLGDNPASPLTNRAISETYPPGSTFKVITTAAALAAGATETEQLTAAPTIPLPGSTAQLENYGGAPCGDEPTVSLREAFVKSCNTAFVQLGIRTGADALRSMARAFGLDSPPRPTPLQVAESTVGPIPDSAALGMTSIGQKDVALTPLANAEIAATIANGGITMRPYLVGSLKGPDLANISTTVGYQQRRAVSPQVAAKLTELMVGAEKVAQQKGAIPGVQIASKTGTAEHGTDPRHTPPHAWYIAFAPAQAPKVAVAVLVENGADRLSATGGALAAPIGRAVIEAALQGEP

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PCZ_B_4(3UPP)
PBPA_MYCTU
[Raw transfer]




PNM_A_3(3UPO)
PBPA_MYCTU
[Raw transfer]




PCZ_A_3(3UPP)
PBPA_MYCTU
[Raw transfer]




PNM_B_4(3UPO)
PBPA_MYCTU
[Raw transfer]




IM2_B_4(3UPN)
PBPA_MYCTU
[Raw transfer]




IM2_A_3(3UPN)
PBPA_MYCTU
[Raw transfer]




GOL_A_18(4BJP)
?
[Raw transfer]




1 PsiBlast_PDB 96.8099% -78 - C1 -3UN7 - PBPA_MYCTU -
4 PsiBlast_PDB 96.2599% -77 - C1 -3UPP 3.5 PBPA_MYCTU
2 PsiBlast_PDB 96.2099% -82 - C1 -3UPN 3.9 PBPA_MYCTU
21 PsiBlast_CBE 95.9299% -80 - C1 -3UPP 3.8 PBPA_MYCTU
23 PsiBlast_CBE 95.3699% -76 - C1 -3UPN 3.8 PBPA_MYCTU
3 PsiBlast_PDB 95.1099% -77 - C1 -3UPO 4.0 PBPA_MYCTU
22 PsiBlast_CBE 94.5299% -79 - C1 -3UPO 3.9 PBPA_MYCTU
24 HHSearch 94.0497% -74 - C1 -3UN7 - PBPA_MYCTU -
18 PsiBlast_PDB 62.4525% -76 - C1 -5DF9 - ? -
16 PsiBlast_PDB 62.4525% -76 - C1 -5DF7 - ? -
26 HHSearch 62.1131% -63 - C1 -4MNR - ? -
49 Fugue 61.4918% -62 - C1 -1QME - PBPX_STRPN -
12 PsiBlast_PDB 61.4625% -77 - C1 -3OCN - ? -
15 PsiBlast_PDB 61.4525% -74 - C1 -4KQR - ? -
25 HHSearch 61.3633% -61 - C1 -4R23 - ? -
17 PsiBlast_PDB 61.3625% -73 - C1 -5DF8 - ? -
9 PsiBlast_PDB 61.2032% -60 - C1 -4R3J - ? -
13 PsiBlast_PDB 61.0525% -74 - C1 -4KQO - ? -
48 Fugue 60.8619% -56 - C1 -1QME - PBPX_STRPN -
14 PsiBlast_PDB 60.8025% -74 - C1 -4KQQ - ? -