@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv0041: (2016-04-19 )
MTESPTAGPGGVPRADDADSDVPRYRYTAELAARLERTWQENWARLGTFNVPNPVGSLAPPDGAAVPDDKLFVQDMFPYPSGEGLHVGHPLGYIATDVYARYFRMVGRNVLHALGFDAFGLPAEQYAVQTGTHPRTRTEANVVNFRRQLGRLGFGHDSRRSFSTTDVDFYRWTQWIFLQIYNAWFDTTANKARPISELVAEFESGARCLDGGRDWAKLTAGERADVIDEYRLVYRADSLVNWCPGLGTVLANEEVTADGRSDRGNFPVFRKRLRQWMMRITAYADRLLDDLDVLDWPEQVKTMQRNWIGRSTGAVALFSARAASDDGFEVDIEVFTTRPDTLFGATYLVLAPEHDLVDELVAASWPAGVNPLWTYGGGTPGEAIAAYRRAIAAKSDLERQESREKTGVFLGSYAINPANGEPVPIFIADYVLAGYGTGAIMAVPGHDQRDWDFARAFGLPIVEVIAGGNISESAYTGDGILVNSDYLNGMSVPAAKRAIVDRLESAGRGRARIEFKLRDWLFARQRYWGEPFPIVYDSDGRPHALDEAALPVELPDVPDYSPVLFDPDDADSEPSPPLAKATEWVHVDLDLGDGLKPYSRDTNVMPQWAGSSWYELRYTDPHNSERFCAKENEAYWMGPRPAEHGPDDPGGVDLYVGGAEHAVLHLLYSRFWHKVLYDLGHVSSREPYRRLVNQGYIQAYAYTDARGSYVPAEQVIERGDRFVYPGPDGEVEVFQEFGKIGKSLKNSVSPDEICDAYGADTLRVYEMSMGPLEASRPWATKDVVGAYRFLQRVWRLVVDEHTGETRVADGVELDIDTLRALHRTIVGVSEDFAALRNNTATAKLIEYTNHLTKKHRDAVPRAAVEPLVQMLAPLAPHIAEELWLRLGNTTSLAHGPFPKADAAYLVDETVEYPVQVNGKVRGRVVVAADTDEETLKAAVLTDEKVQAFLAGATPRKVIVVAGRLVNLVI

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

LMS_A_3(1H3N)
?
[Raw transfer]



LMS_A_7(1OBC)
?
[Raw transfer]



LMS_A_3(2V0C)
?
[Raw transfer]



LMS_A_3(2V0C)
?
[Raw transfer]



LEU_A_2(1OBC)
?
[Raw transfer]



LEU_A_2(1H3N)
?
[Raw transfer]



LEU_A_3(4ARC)
SYL_ECOLI
[Raw transfer]



LEU_A_3(4ARC)
SYL_ECOLI
[Raw transfer]
98 Fugue 92.1844% -82 - C4 -2BYT - ? -
1 PsiBlast_PDB 91.2240% -84 - C4 -2BTE - ? -
23 PsiBlast_CBE 90.9240% -83 - C4 -2BTE - ? -
2 PsiBlast_PDB 90.8640% -83 - C4 -2BYT - ? -
22 PsiBlast_CBE 90.4940% -82 - C4 -2BYT - ? -
21 PsiBlast_CBE 90.4740% -86 - C4 -2V0G - ? -
5 PsiBlast_PDB 90.2840% -84 - C4 -2V0G - ? -
77 HHSearch 88.1744% -80 - C4 -2V0C 6.3 ?
3 PsiBlast_PDB 87.8140% -82 - C4 -1H3N 6.2 ?
4 PsiBlast_PDB 87.6540% -81 - C4 -1OBC 6.2 ?
11 PsiBlast_PDB 87.3237% -89 - C4 -3ZGZ - SYL_ECOLI -
7 PsiBlast_PDB 87.1837% -88 - C4 -4AQ7 - SYL_ECOLI -
75 HHSearch 87.1340% -90 * C4 *4ARC 2.7 SYL_ECOLI
6 PsiBlast_PDB 87.1239% -82 - C4 -2V0C 6.3 ?
25 PsiBlast_CBE 87.1137% -87 - C4 -4AQ7 - SYL_ECOLI -
26 PsiBlast_CBE 86.9937% -88 - C4 -3ZGZ - SYL_ECOLI -
15 PsiBlast_PDB 86.8737% -85 - C4 -4CQN - SYL_ECOLI -
24 PsiBlast_CBE 85.7337% -85 - C4 -4CQN - SYL_ECOLI -
12 PsiBlast_PDB 85.3437% -96 - C4 -3ZJT - SYL_ECOLI -
9 PsiBlast_PDB 85.3337% -95 - C4 -4ARI - SYL_ECOLI -
8 PsiBlast_PDB 85.2737% -94 - C4 -4ARC 2.7 SYL_ECOLI