@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv0070c: (2016-04-19 )
MNTLNDSLTAFDPDIAALIDGELRRQESGLEMIASENYAPLAVMQAQGSVLTNKYAEGYPGRRYYGGCEFVDGVEQLAIDRVKALFGAEYANVQPHSGATANAATMHALLNPGDTILGLSLAHGGHLTHGMRINFSGKLYHATAYEVSKEDYLVDMDAVAEAARTHRPKMIIAGWSAYPRQLDFARFRAIADEVDAVLMVDMAHFAGLVAAGVHPSPVPHAHVVTSTTHKTLGGPRGGIILCNDPAIAKKINSAVFPGQQGGPLEHVIAAKATAFKMAAQPEFAQRQQRCLDGARILAGRLTQPDVAERGIAVLTGGTDVHLVLVDLRDAELDGQQAEDRLAAVDITVNRNAVPFDPRPPMITSGLRIGTPALAARGFSHNDFRAVADLIAAALTATNDDQLGPLRAQVQRLAARYPLYPELHRT

Atome Classification :

(82 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

2BO_A_3(4WXG)
GLYA_STRT1
[Raw transfer]




2BO_A_3(4WXG)
GLYA_STRT1
[Raw transfer]




PLG_A_3(4WXF)
GLYA_STRT1
[Raw transfer]




2BO_C_6(4WXG)
GLYA_STRT1
[Raw transfer]




PLG_C_6(4WXF)
GLYA_STRT1
[Raw transfer]




FON_H_8(1KL2)
?
[Raw transfer]




PLG_A_4(1RVY)
GLYC_RABIT
[Raw transfer]




GLY_A_2(2VMQ)
?
[Raw transfer]




GLY_A_2(2W7J)
?
[Raw transfer]




PLP_A_3(2W7K)
?
[Raw transfer]




PLP_A_3(2VIB)
?
[Raw transfer]




PLP_A_2(2W7L)
?
[Raw transfer]




PLP_A_2(2W7G)
?
[Raw transfer]




PLP_A_3(2VMT)
?
[Raw transfer]




PLP_A_3(2W7M)
?
[Raw transfer]




PLP_A_3(2VMO)
?
[Raw transfer]




PLP_A_3(2VMQ)
?
[Raw transfer]




PLP_A_3(2VGT)
?
[Raw transfer]




ALO_A_3(2VMX)
?
[Raw transfer]




PLP_A_2(2VMX)
?
[Raw transfer]




PLP_A_3(2W7J)
?
[Raw transfer]




PLP_A_3(2VI9)
?
[Raw transfer]




PLP_A_3(2VMW)
?
[Raw transfer]




PLP_A_3(2VGV)
?
[Raw transfer]




PLP_C_3(1KL1)
?
[Raw transfer]




PLP_A_3(2VMU)
?
[Raw transfer]




PLP_A_3(2VGU)
?
[Raw transfer]




PLP_C_3(1YJZ)
?
[Raw transfer]




GOL_B_5(4PVF)
GLYM_HUMAN
[Raw transfer]




GOL_A_3(4PVF)
GLYM_HUMAN
[Raw transfer]




PLP_A_3(2VIA)
?
[Raw transfer]




PLP_C_3(1KKP)
?
[Raw transfer]




PLP_A_3(2VMP)
?
[Raw transfer]




PLP_A_6(1RV3)
GLYC_RABIT
[Raw transfer]




PLP_A_3(2W7H)
?
[Raw transfer]




PLP_C_3(1YJS)
?
[Raw transfer]




PLP_A_3(2W7E)
?
[Raw transfer]




PLP_A_2(2VGS)
?
[Raw transfer]




PLP_A_3(2VMZ)
?
[Raw transfer]




PLP_A_3(2VMS)
?
[Raw transfer]




PLP_A_2(2W7D)
?
[Raw transfer]




PLP_B_4(1CJ0)
GLYC_RABIT
[Raw transfer]




PLP_A_5(2DKJ)
GLYA_THET8
[Raw transfer]




PLP_A_3(1KKJ)
?
[Raw transfer]




PLP_A_5(2DKJ)
GLYA_THET8
[Raw transfer]




PLP_A_9(1RV4)
GLYC_RABIT
[Raw transfer]




PLP_A_6(1RV3)
GLYC_RABIT
[Raw transfer]




PLP_B_9(1RVU)
GLYC_RABIT
[Raw transfer]




PLP_A_2(2VMN)
?
[Raw transfer]




PLP_A_2(2VMV)
?
[Raw transfer]




ALO_A_3(2W7L)
?
[Raw transfer]




PLP_A_2(2W7I)
?
[Raw transfer]




PLP_B_7(1RV3)
GLYC_RABIT
[Raw transfer]




PLP_A_7(1RVU)
GLYC_RABIT
[Raw transfer]




PLP_A_2(2VI8)
?
[Raw transfer]




PLP_A_2(2VI8)
?
[Raw transfer]




PLP_A_3(2W7F)
?
[Raw transfer]




PLP_B_11(1RV4)
GLYC_RABIT
[Raw transfer]




PLP_A_2(2VMR)
?
[Raw transfer]




PLP_B_6(2DKJ)
GLYA_THET8
[Raw transfer]




PLP_A_3(1CJ0)
GLYC_RABIT
[Raw transfer]




PLP_B_5(1RVY)
GLYC_RABIT
[Raw transfer]




PLP_A_2(1BJ4)
GLYC_HUMAN
[Raw transfer]




PLP_A_2(1BJ4)
GLYC_HUMAN
[Raw transfer]




PLP_A_3(2VGW)
?
[Raw transfer]




PLP_C_3(1YJY)
?
[Raw transfer]




FFO_B_8(2VMY)
?
[Raw transfer]




FON_G_7(1KL2)
?
[Raw transfer]




FFO_A_6(2VMY)
?
[Raw transfer]




PLP_A_2(3G8M)
GLYA_ECOLI
[Raw transfer]




56 PsiBlast_CBE 89.8055% -99 - C1 -4N0W - ? -
58 PsiBlast_CBE 89.4055%-100 - C1 -4OTL - ? -
60 PsiBlast_CBE 88.7455% -99 - C1 -4OTL - ? -
64 PsiBlast_CBE 88.7055% -98 - C1 -4OT8 - ? -
54 PsiBlast_CBE 88.6255%-100 - C1 -4N0W - ? -
65 PsiBlast_CBE 88.6155% -98 - C1 -4OT8 - ? -
61 PsiBlast_CBE 88.5755%-100 - C1 -4OTL - ? -
55 PsiBlast_CBE 88.5655% -99 - C1 -4N0W - ? -
62 PsiBlast_CBE 88.4655% -99 - C1 -4OT8 - ? -
59 PsiBlast_CBE 88.2655% -98 - C1 -4OTL - ? -
57 PsiBlast_CBE 88.1855%-101 - C1 -4N0W - ? -
63 PsiBlast_CBE 87.9155% -99 - C1 -4OT8 - ? -
24 PsiBlast_CBE 87.8154%-104 - C1 -3PGY - GLYA_STAAC -
7 PsiBlast_PDB 87.3454%-102 - C1 -3PGY - GLYA_STAAC -
25 PsiBlast_CBE 87.1054%-101 - C1 -3PGY - GLYA_STAAC -
38 PsiBlast_CBE 87.0457% -94 - C1 -2VMQ 4.0 ?
45 PsiBlast_CBE 87.0257% -95 - C1 -2W7J 4.0 ?
50 PsiBlast_CBE 86.9157% -97 - C1 -2VMR 4.2 ?
2 PsiBlast_PDB 86.7759% -96 - C1 -2DKJ 3.0 GLYA_THET8
23 PsiBlast_CBE 86.6754%-104 - C1 -3PGY - GLYA_STAAC -
42 PsiBlast_CBE 86.4757% -96 - C1 -2W7M 4.0 ?
48 PsiBlast_CBE 86.3957% -95 - C1 -2VMT 4.1 ?
21 PsiBlast_CBE 86.3659% -96 - C1 -2DKJ 4.5 GLYA_THET8
17 PsiBlast_PDB 86.3257% -97 - C1 -2VMZ 4.2 ?
11 PsiBlast_PDB 86.2557% -96 - C1 -2VIA 3.7 ?
33 PsiBlast_CBE 86.1857% -95 - C1 -2VGS 4.1 ?
14 PsiBlast_PDB 86.1657% -96 - C1 -2VMX 3.8 ?
26 PsiBlast_CBE 86.1557% -94 - C1 -2VMY 4.2 ?
39 PsiBlast_CBE 86.0257% -95 - C1 -2VMP 3.9 ?
31 PsiBlast_CBE 85.9457% -95 - C1 -2VGU 4.1 ?
18 PsiBlast_PDB 85.9257% -97 - C1 -2W7D 4.3 ?
12 PsiBlast_PDB 85.9257% -95 - C1 -2VI9 3.6 ?
47 PsiBlast_CBE 85.9057% -94 - C1 -2VMU 3.9 ?
30 PsiBlast_CBE 85.8657% -95 - C1 -2VGV 4.0 ?
49 PsiBlast_CBE 85.8257% -95 - C1 -2VMS 4.0 ?
114 HHSearch 85.7459% -94 - C1 -2DKJ 3.0 GLYA_THET8
41 PsiBlast_CBE 85.6957% -95 - C1 -2VMN 4.3 ?
27 PsiBlast_CBE 85.6657% -95 - C1 -2W7H 4.1 ?
9 PsiBlast_PDB 85.6357% -96 - C1 -2VI8 4.2 ?
43 PsiBlast_CBE 85.6257% -93 - C1 -2W7L 4.1 ?
35 PsiBlast_CBE 85.5957% -97 - C1 -1YJY 4.1 ?
10 PsiBlast_PDB 85.5857% -96 - C1 -2VIB 3.4 ?
13 PsiBlast_PDB 85.5757% -96 - C1 -2VMV 4.1 ?
19 PsiBlast_PDB 85.4857% -95 - C1 -2W7E 4.3 ?
40 PsiBlast_CBE 85.4657% -94 - C1 -2VMO 3.5 ?
16 PsiBlast_PDB 85.4657% -94 - C1 -2VMW 4.1 ?
5 PsiBlast_PDB 85.4557% -96 - C1 -1KL1 4.1 ?
34 PsiBlast_CBE 85.4457% -97 - C1 -1YJZ 3.8 ?
20 PsiBlast_PDB 85.3857% -94 - C1 -2W7F 3.3 ?
8 PsiBlast_PDB 85.2057% -95 - C1 -1YJS 4.2 ?
28 PsiBlast_CBE 85.1857% -95 - C1 -2W7G 2.7 ?
32 PsiBlast_CBE 85.1157% -95 - C1 -2VGT 3.7 ?
46 PsiBlast_CBE 85.0957% -94 - C1 -2W7I 4.2 ?
66 PsiBlast_CBE 84.9552% -96 - C1 -4WXG 6.3 GLYA_STRT1
44 PsiBlast_CBE 84.8057% -93 - C1 -2W7K 3.7 ?
6 PsiBlast_PDB 84.6257% -96 - C1 -1KL2 5.4 ?
15 PsiBlast_PDB 84.5857% -95 - C1 -2VMY 4.0 ?
69 PsiBlast_CBE 84.5152% -96 - C1 -4WXF 5.6 GLYA_STRT1
3 PsiBlast_PDB 84.5057% -96 - C1 -1KKJ 3.0 ?
67 PsiBlast_CBE 84.4452% -95 - C1 -4WXG 5.7 GLYA_STRT1
29 PsiBlast_CBE 84.4457% -94 - C1 -2VGW 4.0 ?
4 PsiBlast_PDB 84.1857% -93 - C1 -1KKP 4.1 ?
22 PsiBlast_CBE 83.8357% -94 - C1 -1KL2 5.3 ?
113 HHSearch 83.4752% -94 - C1 -4WXG 5.7 GLYA_STRT1
68 PsiBlast_CBE 83.1452% -94 - C1 -4WXF 5.1 GLYA_STRT1
121 HHSearch 82.1058% -98 * C1 *2VI8 4.2 ?
78 PsiBlast_CBE 81.3254% -92 - C1 -3G8M 4.3 GLYA_ECOLI
111 HHSearch 80.9947% -94 - C1 -1RV3 3.5 GLYC_RABIT
93 PsiBlast_CBE 79.0143% -94 - C1 -1RVU 3.2 GLYC_RABIT
85 PsiBlast_CBE 78.4843% -97 - C1 -1CJ0 4.6 GLYC_RABIT
91 PsiBlast_CBE 77.9743% -96 - C1 -1RVY 3.0 GLYC_RABIT
92 PsiBlast_CBE 77.4943% -95 - C1 -1RVU 3.2 GLYC_RABIT
86 PsiBlast_CBE 77.3543% -96 - C1 -1CJ0 3.9 GLYC_RABIT
101 Fugue 77.2645% -90 - C1 -1BJ4 2.4 GLYC_HUMAN
97 PsiBlast_CBE 77.1443% -94 - C1 -1RV3 3.5 GLYC_RABIT
90 PsiBlast_CBE 77.0443% -96 - C1 -1RVY 3.6 GLYC_RABIT
95 PsiBlast_CBE 76.0243% -94 - C1 -1RV4 3.4 GLYC_RABIT
96 PsiBlast_CBE 75.9043% -93 - C1 -1RV3 3.4 GLYC_RABIT
98 PsiBlast_CBE 75.8146% -96 - C1 -1BJ4 2.4 GLYC_HUMAN
94 PsiBlast_CBE 75.6343% -94 - C1 -1RV4 3.6 GLYC_RABIT
84 PsiBlast_CBE 72.4146% -92 - C1 -4PVF 3.0 GLYM_HUMAN
83 PsiBlast_CBE 71.3946% -97 - C1 -4PVF 3.3 GLYM_HUMAN