@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv0187: (2016-04-20 )
MGMDQQPNPPDVDAFLDSTLVGDDPALAAALAASDAAELPRIAVSAQQGKFLCLLAGAIQARRVLEIGTLGGFSTIWLARGAGPQGRVVTLEYQPKHAEVARVNLQRAGVADRVEVVVGPALDTLPTLAGGPFDLVFIDADKENNVAYIQWAIRLARRGAVIVVDNVIRGGGILAESDDADAVAARRTLQMMGEHPGLDATAIQTVGRKGWDGFALALVR

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SAH_A_3(3DUW)
?
[Raw transfer]



SAH_A_3(3DUW)
?
[Raw transfer]



SAH_B_7(4YMH)
?
[Raw transfer]



SAM_A_3(4YMG)
?
[Raw transfer]



SAH_A_5(4YMH)
?
[Raw transfer]



SAH_D_11(4YMH)
?
[Raw transfer]



SAM_B_8(4YMG)
?
[Raw transfer]



SAH_C_10(4YMH)
?
[Raw transfer]



SAH_A_3(3TR6)
?
[Raw transfer]



FER_A_4(3CBG)
?
[Raw transfer]



FER_A_4(3CBG)
?
[Raw transfer]



SPF_A_13(1SUS)
CAMT_MEDSA
[Raw transfer]
2 PsiBlast_PDB 90.3149%-119 * C1 *3DUW 6.8 ?
118 HHSearch 87.1447%-112 - C1 -3DUW 6.8 ?
1 PsiBlast_PDB 84.6449%-120 - C1 -3DUL - ? -
128 HHSearch 71.5628%-115 - C1 -3TR6 - ? -
119 HHSearch 70.4826%-117 - C1 -3R3H - ? -
107 Fugue 69.0228%-106 - C1 -2AVD - CMTD1_HUMAN -
121 HHSearch 68.1627%-117 - C1 -4PCA - ? -
123 HHSearch 67.6331%-108 - C1 -3CBG 2.5 ?
124 HHSearch 67.5319%-113 - C1 -3NTV - ? -
5 PsiBlast_PDB 67.4729%-113 - C1 -3R3H - ? -
125 HHSearch 67.4428%-107 - C1 -2AVD - CMTD1_HUMAN -
129 HHSearch 67.2025%-127 - C1 -2GPY - ? -
4 PsiBlast_PDB 66.9335%-121 - C1 -3CBG 2.3 ?
130 HHSearch 66.9127%-108 - C1 -4YMH - ? -
127 HHSearch 66.8423%-116 - C1 -2HNK - ? -
20 PsiBlast_PDB 66.8433%-149 - C1 -2GPY - ? -
113 Fugue 65.3925%-105 - C1 -4PCA - ? -
19 PsiBlast_PDB 64.9428% -96 - C1 -3C3P - ? -
106 Fugue 64.4227%-111 - C1 -4OA5 - ? -
21 PsiBlast_CBE 64.3032%-113 - C1 -4PCL - ? -
6 PsiBlast_PDB 58.9433%-125 - C1 -3TR6 5.2 ?
11 PsiBlast_PDB 58.8136%-130 - C1 -4YMG 8.5 ?
31 PsiBlast_CBE 58.0936%-136 - C1 -4YMH 7.2 ?
33 PsiBlast_CBE 57.4536%-131 - C1 -4YMH 4.9 ?
32 PsiBlast_CBE 57.4336%-129 - C1 -4YMH 7.3 ?
12 PsiBlast_PDB 57.3236%-131 - C1 -4YMH 7.5 ?
34 PsiBlast_CBE 57.2136%-133 - C1 -4YMG 8.3 ?
15 PsiBlast_PDB 53.2230%-121 - C1 -1SUS 4.1 CAMT_MEDSA