@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv0198c: (2016-04-20 )
MTLAIPSGIDLSHIDADARPQDDLFGHVNGRWLAEHEIPADRATDGAFRSLFDRAETQVRDLIIQASQAGAAVGTDAQRIGDLYASFLDEEAVERAGVQPLHDELATIDSAADATELAAALGTLQRAGVGGGIGVYVDTDSKDSTRYLVHFTQSGIGLPDESYYRDEQHAAVLAAYPGHIARMFGLVYGGESRDHAKTADRIVALETKLADAHWDVVKRRDADLGYNLRTFAQLQTEGAGFDWVSWVTALGSAPDAMTELVVRQPDYLVTFASLWASVNVEDWKCWARWRLIRARAPWLTRALVAEDFEFYGRTLTGAQQLRDRWKRGVSLVENLMGDAVGKLYVQRHFPPDAKSRIDTLVDNLQEAYRISISELDWMTPQTRQRALAKLNKFTAKVGYPIKWRDYSKLAIDRDDLYGNVQRGYAVNHDRELAKLFGPVDRDEWFMTPQTVNAYYNPGMNEIVFPAAILQPPFFDPQADEAANYGGIGAVIGHEIGHGFDDQGAKYDGDGNLVDWWTDDDRTEFAARTKALIEQYHAYTPRDLVDHPGPPHVQGAFTIGENIGDLGGLSIALLAYQLSLNGNPAPVIDGLTGMQRVFFGWAQIWRTKSRAAEAIRRLAVDPHSPPEFRCNGVVRNVDAFYQAFDVTEDDALFLDPQRRVRIWN

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

RDF_A_14(4CTH)
NEP_HUMAN
[Raw transfer]



I20_A_6(2QPJ)
NEP_HUMAN
[Raw transfer]



RDF_A_6(1DMT)
NEP_HUMAN
[Raw transfer]



RDF_A_4(3DWB)
ECE1_HUMAN
[Raw transfer]



RDF_A_6(1DMT)
NEP_HUMAN
[Raw transfer]



BIR_A_6(1R1H)
NEP_HUMAN
[Raw transfer]



BIR_A_6(1R1H)
NEP_HUMAN
[Raw transfer]



OIR_A_6(1R1J)
NEP_HUMAN
[Raw transfer]



TI1_A_6(1R1I)
NEP_HUMAN
[Raw transfer]



GOL_A_6(4CTH)
NEP_HUMAN
[Raw transfer]



HA0_A_3(2YB9)
NEP_HUMAN
[Raw transfer]



CIT_A_3(4IUW)
?
[Raw transfer]



CIT_A_3(4IUW)
?
[Raw transfer]



STS_A_7(1Y8J)
NEP_HUMAN
[Raw transfer]
1 PsiBlast_PDB 97.14100% -88 - C4 -3ZUK - ? -
21 PsiBlast_CBE 97.05100% -88 - C4 -3ZUK - ? -
22 HHSearch 95.2097% -86 - C4 -3ZUK - ? -
2 PsiBlast_PDB 79.7430% -76 - C4 -1DMT 6.5 NEP_HUMAN
3 PsiBlast_PDB 79.6930% -77 - C4 -1R1H 6.8 NEP_HUMAN
5 PsiBlast_PDB 79.4730% -75 - C4 -1R1J 5.7 NEP_HUMAN
9 PsiBlast_PDB 79.4030% -79 - C4 -4CTH 7.4 NEP_HUMAN
8 PsiBlast_PDB 79.2530% -79 - C4 -2YB9 4.1 NEP_HUMAN
6 PsiBlast_PDB 79.0630% -77 - C4 -1Y8J 5.2 NEP_HUMAN
7 PsiBlast_PDB 79.0430% -74 - C4 -2QPJ 5.0 NEP_HUMAN
4 PsiBlast_PDB 79.0230% -73 - C4 -1R1I 4.6 NEP_HUMAN
25 HHSearch 78.8731% -75 - C4 -1R1H 6.8 NEP_HUMAN
32 Fugue 78.5930% -71 - C4 -1DMT 6.5 NEP_HUMAN
10 PsiBlast_PDB 76.5530% -72 - C4 -3DWB 5.9 ECE1_HUMAN
24 HHSearch 75.7629% -73 - C4 -3DWB - ECE1_HUMAN -
33 Fugue 74.4230% -71 - C4 -4IUW 3.0 ?
11 PsiBlast_PDB 73.9530% -70 - C4 -4IUW 3.0 ?
23 HHSearch 72.2128% -70 * C4 *4IUW - ? -
41 Fugue 47.3021% -37 - C2 -5EY9 - FAA32_MYCMM -
37 Fugue 45.2215% -34 - C3 -4M59 - ? -