@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv0211: (2016-04-20 )
MTSATIPGLDTAPTNHQGLLSWVEEVAELTQPDRVVFTDGSEEEFQRLCDQLVEAGTFIRLNPEKHKNSYLALSDPSDVARVESRTYICSAKEIDAGPTNNWMDPGEMRSIMKDLYRGCMRGRTMYVVPFCMGPLGAEDPKLGVEITDSEYVVVSMRTMTRMGKAALEKMGDDGFFVKALHSVGAPLEPGQKDVAWPCSETKYITHFPETREIWSYGSGYGGNALLGKKCYSLRIASAMAHDEGWLAEHMLILKLISPENKAYYFAAAFPSACGKTNLAMLQPTIPGWRAETLGDDIAWMRFGKDGRLYAVNPEFGFFGVAPGTNWKSNPNAMRTIAAGNTVFTNVALTDDGDVWWEGLEGDPQHLIDWKGNDWYFRETETNAAHPNSRYCTPMSQCPILAPEWDDPQGVPISGILFGGRRKTTVPLVTEARDWQHGVFIGATLGSEQTAAAEGKVGNVRRDPMAMLPFLGYNVGDYFQHWINLGKHADESKLPKVFFVNWFRRGDDGRFLWPGFGENSRVLKWIVDRIEHKAGGATTPIGTVPAVEDLDLDGLDVDAADVAAALAVDADEWRQELPLIEEWLQFVGEKLPTGVKDEFDALKERLG

Atome Classification :

(50 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GTP_C_12(3DT4)
PCKGC_RAT
[Raw transfer]




GTP_A_6(3DT2)
PCKGC_RAT
[Raw transfer]




GTP_B_12(4OX2)
?
[Raw transfer]




GCP_A_5(1KHB)
PCKGC_HUMAN
[Raw transfer]




GCP_A_5(1KHB)
PCKGC_HUMAN
[Raw transfer]




GTP_A_11(3DT4)
PCKGC_RAT
[Raw transfer]




GTP_A_2(4YW9)
?
[Raw transfer]




GTP_A_2(4GMU)
?
[Raw transfer]




GTP_A_2(4GNQ)
PCKGC_RAT
[Raw transfer]




GTP_A_2(4GMU)
?
[Raw transfer]




GTP_A_2(4GNO)
PCKGC_RAT
[Raw transfer]




GTP_A_3(4GMZ)
?
[Raw transfer]




GTP_A_5(4OX2)
?
[Raw transfer]




GTP_A_2(4GMM)
PCKGC_RAT
[Raw transfer]




GTP_A_2(4GNM)
?
[Raw transfer]




GTP_A_3(3MOF)
PCKGC_RAT
[Raw transfer]




GDP_A_2(4WPU)
PCKG_MYCTA
[Raw transfer]




GNP_A_2(4WL8)
PCKG_MYCTA
[Raw transfer]




GDP_A_2(4R43)
PCKG_MYCTU
[Raw transfer]




PPF_A_7(2RK8)
PCKGC_RAT
[Raw transfer]




GDP_A_2(4GMW)
PCKGC_RAT
[Raw transfer]




GDP_A_2(4RCG)
PCKG_MYCTU
[Raw transfer]




GDP_A_2(4WOU)
PCKG_MYCTA
[Raw transfer]




GDP_B_10(3MOH)
PCKGC_RAT
[Raw transfer]




GDP_A_3(3MOH)
PCKGC_RAT
[Raw transfer]




GDP_A_2(4GNP)
?
[Raw transfer]




PPF_B_8(2RK8)
PCKGC_RAT
[Raw transfer]




GDP_A_5(4GNL)
PCKGC_RAT
[Raw transfer]




FMT_B_11(2RK8)
PCKGC_RAT
[Raw transfer]




NTM_A_5(4YWD)
?
[Raw transfer]




PEP_A_4(4WPT)
PCKG_MYCTA
[Raw transfer]




PEP_A_4(4WPT)
PCKG_MYCTA
[Raw transfer]




3PP_A_5(2RKD)
PCKGC_RAT
[Raw transfer]




1WD_A_5(4YW8)
PCKGC_RAT
[Raw transfer]




PEP_A_4(1KHF)
PCKGC_HUMAN
[Raw transfer]




1WD_A_7(4YW9)
?
[Raw transfer]




PEP_B_7(2QZY)
PCKGM_CHICK
[Raw transfer]




PEP_A_5(2QZY)
PCKGM_CHICK
[Raw transfer]




SAT_A_6(2RKE)
PCKGC_RAT
[Raw transfer]




1PE_A_7(2FAF)
PCKGM_CHICK
[Raw transfer]




PEP_B_6(2GMV)
PCKGC_HUMAN
[Raw transfer]




UN8_A_7(2GMV)
PCKGC_HUMAN
[Raw transfer]




FTB_A_5(1NHX)
PCKGC_HUMAN
[Raw transfer]




TSX_A_4(1M51)
PCKGC_HUMAN
[Raw transfer]




1WD_A_9(4YW8)
PCKGC_RAT
[Raw transfer]




1WD_C_13(4YWB)
?
[Raw transfer]




4 PsiBlast_PDB 99.55100% -95 - C11 -4WL8 8.8 PCKG_MYCTA
71 HHSearch 99.08100% -92 - C11 -4WPT 2.9 PCKG_MYCTA
6 PsiBlast_PDB 99.08100% -92 - C11 -4WPT 2.9 PCKG_MYCTA
5 PsiBlast_PDB 98.96100% -95 - C11 -4WOU 8.7 PCKG_MYCTA
3 PsiBlast_PDB 98.79100% -93 - C11 -4WIE - PCKG_MYCTA -
2 PsiBlast_PDB 98.78100% -94 - C11 -4R43 8.7 PCKG_MYCTU
1 PsiBlast_PDB 98.69100% -92 - C11 -4WIU - PCKG_MYCTA -
8 PsiBlast_PDB 98.6499% -93 - C11 -4WPU 7.3 PCKG_MYCTA
7 PsiBlast_PDB 98.2299% -95 - C11 -4RCG 7.8 PCKG_MYCTU
10 PsiBlast_PDB 98.0799% -94 - C11 -5I67 - ? -
9 PsiBlast_PDB 97.3899% -91 - C11 -4WPV - PCKG_MYCTA -
11 PsiBlast_PDB 88.1664% -88 - C11 -2ZCI - PCKG_CORGL -
72 HHSearch 87.9064% -88 - C11 -2ZCI - PCKG_CORGL -
16 PsiBlast_PDB 84.7751% -89 - C11 -1NHX 9.7 PCKGC_HUMAN
14 PsiBlast_PDB 84.5651% -88 - C11 -1KHG - PCKGC_HUMAN -
12 PsiBlast_PDB 84.4651% -88 - C11 -1KHB 9.8 PCKGC_HUMAN
15 PsiBlast_PDB 84.4551% -90 - C11 -1M51 8.9 PCKGC_HUMAN
13 PsiBlast_PDB 84.3451% -87 - C11 -1KHF 3.9 PCKGC_HUMAN
17 PsiBlast_PDB 84.3351% -89 - C11 -2GMV 10.7 PCKGC_HUMAN
93 Fugue 84.2551% -82 * C11 *1KHB 9.8 PCKGC_HUMAN
21 PsiBlast_CBE 84.0151% -88 - C11 -2GMV 2.8 PCKGC_HUMAN
74 HHSearch 83.9052% -83 - C11 -4GMU 9.7 ?
56 PsiBlast_CBE 83.8450% -92 - C11 -4GMW 7.0 PCKGC_RAT
44 PsiBlast_CBE 83.8351% -85 - C11 -4OX2 10.5 ?
58 PsiBlast_CBE 83.7850% -89 - C11 -4GMM 9.6 PCKGC_RAT
53 PsiBlast_CBE 83.7651% -89 - C11 -4GNQ 9.6 PCKGC_RAT
36 PsiBlast_CBE 83.7351% -88 - C11 -2RK8 3.6 PCKGC_RAT
47 PsiBlast_CBE 83.7151% -90 - C11 -3MOH 7.9 PCKGC_RAT
30 PsiBlast_CBE 83.7151% -86 - C11 -3DT4 10.8 PCKGC_RAT
22 PsiBlast_CBE 83.6951% -88 - C11 -4YWB 3.8 ?
57 PsiBlast_CBE 83.6750% -89 - C11 -4GMU 9.7 ?
54 PsiBlast_CBE 83.6751% -88 - C11 -4GNP 8.6 ?
51 PsiBlast_CBE 83.6651% -87 - C11 -4GNL 8.7 PCKGC_RAT
23 PsiBlast_CBE 83.6451% -88 - C11 -4YW9 10.0 ?
45 PsiBlast_CBE 83.6151% -92 - C11 -4OX2 9.6 ?
52 PsiBlast_CBE 83.5951% -89 - C11 -4GMZ 9.3 ?
31 PsiBlast_CBE 83.5651% -85 - C11 -3DT2 10.6 PCKGC_RAT
33 PsiBlast_CBE 83.5351% -88 - C11 -2RKD 2.8 PCKGC_RAT
55 PsiBlast_CBE 83.5251% -87 - C11 -4GNO 9.7 PCKGC_RAT
24 PsiBlast_CBE 83.4951% -90 - C11 -4YW8 2.7 PCKGC_RAT
32 PsiBlast_CBE 83.4851% -89 - C11 -2RKE 3.5 PCKGC_RAT
37 PsiBlast_CBE 83.4751% -83 - C11 -2RK8 4.0 PCKGC_RAT
50 PsiBlast_CBE 83.4551% -86 - C11 -4GNM 9.4 ?
49 PsiBlast_CBE 83.4551% -84 - C11 -3MOF 8.2 PCKGC_RAT
29 PsiBlast_CBE 83.2551% -84 - C11 -3DT4 10.7 PCKGC_RAT
60 PsiBlast_CBE 83.2049% -89 - C11 -2QZY 4.1 PCKGM_CHICK
19 PsiBlast_PDB 83.1251% -91 - C11 -4YWD 2.6 ?
66 PsiBlast_CBE 83.0749% -88 - C11 -2FAF 3.5 PCKGM_CHICK
46 PsiBlast_CBE 82.9351% -87 - C11 -3MOH 8.2 PCKGC_RAT
59 PsiBlast_CBE 82.8249% -88 - C11 -2QZY 3.9 PCKGM_CHICK