@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv0242c: (2016-04-20 )
MAPKRSSDLFSQVVNSGPGSFLARQLGVPQPETLRRYRAGEPPLTGSLLIGGAGRVVEPLRAALEKDYDLVGNNLGGRWADSFGGLVFDATGITEPAGLKGLHEFFTPVLRNLGRCGRVVVVGGTPEAAASTNERIAQRALEGFTRSLGKELRRGATTALVYLSPDAKPAATGLESTMRFLLSAKSAYVDGQVFSVGADDSTPPADWEKPLDGKVAIVTGAARGIGATIAEVFARDGAHVVAIDVESAAENLAETASKVGGTALWLDVTADDAVDKISEHLRDHHGGKADILVNNAGITRDKLLANMDDARWDAVLAVNLLAPLRLTEGLVGNGSIGEGGRVIGLSSIAGIAGNRGQTNYATTKAGMIGITQALAPGLAAKGITINAVAPGFIETQMTAAIPLATREVGRRLNSLLQGGQPVDVAEAIAYFASPASNAVTGNVIRVCGQAMIGA

Atome Classification :

(36 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_A_5(4AG3)
FABG_PSEAE
[Raw transfer]



NDP_B_9(4AG3)
FABG_PSEAE
[Raw transfer]



NAP_A_8(3RSH)
FABG_VIBCH
[Raw transfer]



NAI_D_9(4NBU)
?
[Raw transfer]



NDP_A_8(4I08)
FABG_VIBCH
[Raw transfer]



NDP_B_16(4I08)
FABG_VIBCH
[Raw transfer]



NAP_B_19(3RSH)
FABG_VIBCH
[Raw transfer]



NAP_A_5(3TZC)
?
[Raw transfer]



NDP_D_8(4WK6)
?
[Raw transfer]



NDP_C_7(4WK6)
?
[Raw transfer]



NDP_B_6(4WK6)
?
[Raw transfer]



HXC_A_3(3V1U)
?
[Raw transfer]



NDP_A_5(4WK6)
?
[Raw transfer]



EDO_B_22(3RRO)
FABG_VIBCH
[Raw transfer]



EDO_A_7(4I08)
FABG_VIBCH
[Raw transfer]



MPD_A_21(4H15)
?
[Raw transfer]



1PE_B_5(2PNF)
FABG_AQUAE
[Raw transfer]



1PE_A_6(2PNF)
FABG_AQUAE
[Raw transfer]



PGE_B_24(3RRO)
FABG_VIBCH
[Raw transfer]



PGE_A_8(3RRO)
FABG_VIBCH
[Raw transfer]
2 PsiBlast_PDB 96.37100% -99 - C2 -4FW8 - ? -
5 PsiBlast_PDB 95.67100% -99 - C2 -3Q6I - ? -
3 PsiBlast_PDB 94.57100%-100 - C2 -3V1T - ? -
27 PsiBlast_CBE 93.94100%-101 - C2 -3Q6I - ? -
24 PsiBlast_CBE 93.78100%-100 - C2 -4FW8 - ? -
26 PsiBlast_CBE 93.60100%-101 - C2 -3Q6I - ? -
25 PsiBlast_CBE 93.11100% -98 - C2 -3Q6I - ? -
4 PsiBlast_PDB 93.03100%-101 - C2 -3V1U 6.3 ?
23 PsiBlast_CBE 93.01100% -99 - C2 -4FW8 - ? -
22 PsiBlast_CBE 92.71100%-101 - C2 -4FW8 - ? -
1 PsiBlast_PDB 87.61100%-106 - C2 -3LLS - ? -
21 PsiBlast_CBE 87.49100%-105 - C2 -3LLS - ? -
104 Fugue 87.2699%-107 - C2 -3LLS - ? -
6 PsiBlast_PDB 87.0783% -96 - C2 -3U0B - ? -
114 HHSearch 84.5182% -93 - C2 -3U0B - ? -
76 PsiBlast_CBE 53.4743% -94 - C2 -4BNV - FABG_PSEAE -
42 PsiBlast_CBE 53.3343% -97 - C2 -4BO7 - FABG_PSEAE -
71 PsiBlast_CBE 53.1143% -94 - C2 -4BNX - FABG_PSEAE -
68 PsiBlast_CBE 52.9343% -91 - C2 -4BNY - FABG_PSEAE -
56 PsiBlast_CBE 52.7243% -91 - C2 -4BO2 - FABG_PSEAE -
101 PsiBlast_CBE 49.3840% -83 - C2 -2PNF 1.7 FABG_AQUAE
90 PsiBlast_CBE 49.2240% -99 - C2 -3TZC 4.5 ?
14 PsiBlast_PDB 48.8643% -79 - C2 -4AG3 10.4 FABG_PSEAE
102 PsiBlast_CBE 48.4040% -82 - C2 -2PNF 1.9 FABG_AQUAE
12 PsiBlast_PDB 47.7040% -88 - C2 -4I08 8.1 FABG_VIBCH
11 PsiBlast_PDB 47.4940% -85 - C2 -3RRO 2.0 FABG_VIBCH
35 PsiBlast_CBE 47.4440% -84 - C2 -3RRO 2.6 FABG_VIBCH
30 PsiBlast_CBE 47.2840% -91 - C2 -4WK6 5.3 ?
9 PsiBlast_PDB 46.9440% -92 - C2 -4WK6 3.7 ?
28 PsiBlast_CBE 46.4640% -93 - C2 -4WK6 5.8 ?
84 PsiBlast_CBE 46.4443% -77 - C2 -4AG3 10.5 FABG_PSEAE
10 PsiBlast_PDB 46.4140% -86 - C2 -3RSH 11.3 FABG_VIBCH
103 PsiBlast_CBE 46.0141% -77 - C2 -4NBU 9.7 ?
33 PsiBlast_CBE 45.3040% -86 - C2 -4I08 9.9 FABG_VIBCH
34 PsiBlast_CBE 45.0140% -84 - C2 -3RSH 10.0 FABG_VIBCH
29 PsiBlast_CBE 43.9340% -88 - C2 -4WK6 5.1 ?